Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01399 ATGAGCAGCGAAGTCATGGGAGATGGCCGGAGGCGGGCCTTAGCGCTGCAACTTCTTGACCTTGTACGTGACTTTGTTCTGATGTCAGGGAGGTCGATCGCTGGCACTGGAGACGCTATGAAGAAAGATTGCACCGATCTCATTCGTCGGATTGCCCTCCTGATCCATCTGGCGGAGGAGATAACAAACTTCTGCAGTGGCAGCGGGGACAATTTTGAGAAATCGAATGATGATGGGTCTTCTACTTCTTTATCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTTGGAGCAATTCAGGCGGCAAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGCATACGACGAGGAGGGTTGTGCGCCTTCGACGGAGGAAGGTACCAAAAAACTGGTTCTACAATTCAAGCATGTGACAACAAGATTGGAAACTGCACTTTCAAATCTGCCATATGATCAATTTTGTGTCTCAGACGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAATTAAGGAGAGCATCACACAAGTATGAATCTATGTCTAACCCTGCAGAAAAGAAGCTTCAAGCAAGAAGTTCCGTAAAATGGATGATCAATAATGAAGTCAGAAGCATGGCTAGCGTTGATGATGGAGATGAGTCTCAGCATCGTCCTCGAAACCGCGATCATCTGGCTAGTCTCGATTCGGTGAATTCTTGTTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATACGGAAGATGTTGTAGCCAGCAGGAGCCAAGATGAGGTTAAGAAGCCTCTGGAAATTGAAATTCCTGAAAACTTCTTATGCCCCATTTCCTATGAGTTGATGTTGGATCCTGTCATCATCTCGACGGGACAGACATATGAAAGATCCAACATACAAAAGTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAGGAGCAGCTCCAAGCACTAATCCTCACTCCAAATTTTATAATGAGAAAACTAATATATGAATGGTGTGAAGAGCACAATGTCAAGCTAGAGGAAGGACTAACCAACGGGAAACTTAAGAAGTGTAGATCGTCTGAAGACGACTGCCGAAGAACTCCTCTGCCAATCAAAACTCTGGTTCGACACCTATCATTTGGGTCGGTTCAAGAGCAAAAGATCGCCGTGACGGAGATTCGACAGCTATCGAAAAGCAGCTCAGAGCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTCGTTAACCTTTTATCTTCAAAAGATGTTATAACACAAGAAAATGCAATTTCTTGCATTCTTAACCTTTCACTTCATGAGCAAAACAAGAGACTTATTATGCTTTCTGGTGCAGTTTCATACATTTCCCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAATGTGCAGCTGCGACGATTTACAGCTTGTCGTTAGCCGATGAGAACAAGGCAATAATAGGGGCTTCAGGTGTCATACCGGACTTATTAGAAATTCTCGACATCGGTACCCCGAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGTACCAAGGGAACAAGGGCAGGGCTTTGAATGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCCTTGGTTGATGATGCTCTCTATATAATGTCGATTCTTTGCGGCCATCCGGATGCGAAAGCTGCAATGGGGAATGCAAATTCACTGCTTGTTTTGACTGATGTTTTGAAGACGGGGTCACCTCGCAGCAAGGAGAATGCAGCAGCTGTTCTGCTTGCATTCTGCAAGGGAGACAGGGAGAAGCTGGAATGGTTGACAAGGCTGGGCGCGATGGCACCATTGATGAAACTTGCGGAGAACGGAACGGGGAGAGCAAGGCGGAAGGCTGCTTCATTGTTGGACCAACTCAGAAAATCATGA 1926 45.33 MSSEVMGDGRRRALALQLLDLVRDFVLMSGRSIAGTGDAMKKDCTDLIRRIALLIHLAEEITNFCSGSGDNFEKSNDDGSSTSLSSWLDCLSEVVGAIQAAKRLLYTALTFSAYDEEGCAPSTEEGTKKLVLQFKHVTTRLETALSNLPYDQFCVSDEVQEQVDLVRAQLRRASHKYESMSNPAEKKLQARSSVKWMINNEVRSMASVDDGDESQHRPRNRDHLASLDSVNSCFDECSSVVHSDTEDVVASRSQDEVKKPLEIEIPENFLCPISYELMLDPVIISTGQTYERSNIQKWIDRGNRICPKTQEQLQALILTPNFIMRKLIYEWCEEHNVKLEEGLTNGKLKKCRSSEDDCRRTPLPIKTLVRHLSFGSVQEQKIAVTEIRQLSKSSSEHRVEIAEAGAIPQLVNLLSSKDVITQENAISCILNLSLHEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVIPDLLEILDIGTPRGQKDAAGALLNLCMYQGNKGRALNAGIVKPLLKMLSDSNGSLVDDALYIMSILCGHPDAKAAMGNANSLLVLTDVLKTGSPRSKENAAAVLLAFCKGDREKLEWLTRLGAMAPLMKLAENGTGRARRKAASLLDQLRKS 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19176931 19180902 + MELO3C005318.2.1 Cme09g01399 338259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01399 641 SUPERFAMILY RING/U-box 261 338 - -
Cme09g01399 641 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515
Cme09g01399 641 Pfam U-box domain 265 336 IPR003613 GO:0004842|GO:0016567
Cme09g01399 641 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Cme09g01399 641 PANTHER U BOX DOMAIN-CONTAINING 22 640 - -
Cme09g01399 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 345 IPR013083 -
Cme09g01399 641 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Cme09g01399 641 Coils Coil 156 176 - -
Cme09g01399 641 SMART arm_5 476 516 IPR000225 GO:0005515
Cme09g01399 641 SMART arm_5 517 557 IPR000225 GO:0005515
Cme09g01399 641 SMART arm_5 394 434 IPR000225 GO:0005515
Cme09g01399 641 SMART arm_5 435 475 IPR000225 GO:0005515
Cme09g01399 641 SMART arm_5 558 598 IPR000225 GO:0005515
Cme09g01399 641 SUPERFAMILY ARM repeat 365 638 IPR016024 -
Cme09g01399 641 Gene3D - 482 641 IPR011989 -
Cme09g01399 641 Gene3D - 363 481 IPR011989 -
Cme09g01399 641 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 640 - -
Cme09g01399 641 CDD RING-Ubox_PUB 269 311 IPR045210 -
Cme09g01399 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01399 Cme-Chr9:19176931 Cme10g01508 Cme-Chr10:18915283 0 dispersed
Cme09g01399 Cme-Chr9:19176931 Cme11g01284 Cme-Chr11:19590109 5.53E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01399 - - cmax:111489474 946.036