Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01407 ATGGCATTTCTTGATCCCATCAATTCATCCAACTTGGATCTCTCCATTTCCATGCCTGGCTTTTCTTCTTCACTACCGACCACTCGTCCTTTGCTCGTGAGAGAATTGGACATGAACCGAGTACCCGCGGAGGGAGAAGCGGAAGCAGATTGGGCGAGGGGGCAGAGCGTGGAGGAGGAGGGGGAAGAAGAAAGCTCCATTAATAATAATAATGGAGGTACTCAACCAAGGAAGAAGCTTCGTCTGTCGAAAGATCAGTCTCGCCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGGTTTGGCTATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACCGAGTTGGAATGCGAATATATGAAGAGATGTTTTGGATCATTAACGGAGCAAAATCGTCGGTTGCAGTGGGAACTAGAGGAGCTAAGAGCCATCAAGGTTGCTCCGCCTGCTGTTGTCTCACGACACAACCGATCACAGCCGCCCCTTTCGAGGTCTACTATAACCATATGTCCCCGGTGCGAACGTATAACATCCAATAAGAACACTGTTGCAGAGAACGCCACCACTACTGCGACCGCGATGCAGTCAGAGGTGGTTTTGTCCGCCCTCAAATTGCGGCAGCCGTCGCGAGCTTGTTGA 705 49.08 MAFLDPINSSNLDLSISMPGFSSSLPTTRPLLVRELDMNRVPAEGEAEADWARGQSVEEEGEEESSINNNNGGTQPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQWELEELRAIKVAPPAVVSRHNRSQPPLSRSTITICPRCERITSNKNTVAENATTTATAMQSEVVLSALKLRQPSRAC 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19255000 19257212 - MELO3C005327.2.1 Cme09g01407 338267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01407 234 SMART HOX_1 75 137 IPR001356 GO:0003677
Cme09g01407 234 PANTHER - 6 216 - -
Cme09g01407 234 SMART halz 133 176 IPR003106 GO:0006355|GO:0043565
Cme09g01407 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 6 216 - -
Cme09g01407 234 Gene3D - 70 139 - -
Cme09g01407 234 MobiDBLite consensus disorder prediction 43 81 - -
Cme09g01407 234 SUPERFAMILY Homeodomain-like 65 134 IPR009057 -
Cme09g01407 234 Pfam Homeobox associated leucine zipper 133 165 IPR003106 GO:0006355|GO:0043565
Cme09g01407 234 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Cme09g01407 234 CDD homeodomain 76 134 IPR001356 GO:0003677
Cme09g01407 234 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Cme09g01407 234 MobiDBLite consensus disorder prediction 43 60 - -
Cme09g01407 234 Pfam Homeodomain 77 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02551 Cme-Chr6:32504663 Cme09g01407 Cme-Chr9:19255000 5.80E-41 dispersed
Cme09g01407 Cme-Chr9:19255000 Cme10g01542 Cme-Chr10:19729946 5.92E-34 dispersed
Cme09g01407 Cme-Chr9:19255000 Cme08g00681 Cme-Chr8:4509619 9.27E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41962 PF00046 Homeodomain 1.10E-16 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01407 K09338 - csv:101206325 386.341