Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g01407 | ATGGCATTTCTTGATCCCATCAATTCATCCAACTTGGATCTCTCCATTTCCATGCCTGGCTTTTCTTCTTCACTACCGACCACTCGTCCTTTGCTCGTGAGAGAATTGGACATGAACCGAGTACCCGCGGAGGGAGAAGCGGAAGCAGATTGGGCGAGGGGGCAGAGCGTGGAGGAGGAGGGGGAAGAAGAAAGCTCCATTAATAATAATAATGGAGGTACTCAACCAAGGAAGAAGCTTCGTCTGTCGAAAGATCAGTCTCGCCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGGTTTGGCTATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACCGAGTTGGAATGCGAATATATGAAGAGATGTTTTGGATCATTAACGGAGCAAAATCGTCGGTTGCAGTGGGAACTAGAGGAGCTAAGAGCCATCAAGGTTGCTCCGCCTGCTGTTGTCTCACGACACAACCGATCACAGCCGCCCCTTTCGAGGTCTACTATAACCATATGTCCCCGGTGCGAACGTATAACATCCAATAAGAACACTGTTGCAGAGAACGCCACCACTACTGCGACCGCGATGCAGTCAGAGGTGGTTTTGTCCGCCCTCAAATTGCGGCAGCCGTCGCGAGCTTGTTGA | 705 | 49.08 | MAFLDPINSSNLDLSISMPGFSSSLPTTRPLLVRELDMNRVPAEGEAEADWARGQSVEEEGEEESSINNNNGGTQPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEGLAMELKLKPRQVEVWFQNRRARSKLKQTELECEYMKRCFGSLTEQNRRLQWELEELRAIKVAPPAVVSRHNRSQPPLSRSTITICPRCERITSNKNTVAENATTTATAMQSEVVLSALKLRQPSRAC | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 19255000 | 19257212 | - | MELO3C005327.2.1 | Cme09g01407 | 338267 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g01407 | 234 | SMART | HOX_1 | 75 | 137 | IPR001356 | GO:0003677 | |
Cme09g01407 | 234 | PANTHER | - | 6 | 216 | - | - | |
Cme09g01407 | 234 | SMART | halz | 133 | 176 | IPR003106 | GO:0006355|GO:0043565 | |
Cme09g01407 | 234 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 | 6 | 216 | - | - | |
Cme09g01407 | 234 | Gene3D | - | 70 | 139 | - | - | |
Cme09g01407 | 234 | MobiDBLite | consensus disorder prediction | 43 | 81 | - | - | |
Cme09g01407 | 234 | SUPERFAMILY | Homeodomain-like | 65 | 134 | IPR009057 | - | |
Cme09g01407 | 234 | Pfam | Homeobox associated leucine zipper | 133 | 165 | IPR003106 | GO:0006355|GO:0043565 | |
Cme09g01407 | 234 | ProSiteProfiles | 'Homeobox' domain profile. | 73 | 133 | IPR001356 | GO:0003677 | |
Cme09g01407 | 234 | CDD | homeodomain | 76 | 134 | IPR001356 | GO:0003677 | |
Cme09g01407 | 234 | ProSitePatterns | 'Homeobox' domain signature. | 108 | 131 | IPR017970 | GO:0000981|GO:0006355 | |
Cme09g01407 | 234 | MobiDBLite | consensus disorder prediction | 43 | 60 | - | - | |
Cme09g01407 | 234 | Pfam | Homeodomain | 77 | 131 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g02551 | Cme-Chr6:32504663 | Cme09g01407 | Cme-Chr9:19255000 | 5.80E-41 | dispersed | |
Cme09g01407 | Cme-Chr9:19255000 | Cme10g01542 | Cme-Chr10:19729946 | 5.92E-34 | dispersed | |
Cme09g01407 | Cme-Chr9:19255000 | Cme08g00681 | Cme-Chr8:4509619 | 9.27E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41962 | PF00046 | Homeodomain | 1.10E-16 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g01407 | K09338 | - | csv:101206325 | 386.341 |