Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01416 ATGCATAAAAGCACCACTTCTGCGTCGAATACTATTGCTGCTGCGACTACTATGTCGTCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAATGATGTTTATGCTTCTCTCTATAATTCACCAATCTTTGCTCCAAAGCAACCCGTGCCTGTCTCACTTCCATTAACCCTCTATGGTGATTCGACTCACGCGGATTCATCAATTTCGGGTTCAAAATCGATAAACAATCATTTCTATCAAACGCGCGTCGTACAAGATCACCAAGAAATGGTTAATCGCCATAGCCTCTGTCTCACTCAGCTTCGAGAAGCTACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTAAGCAAACACCTCAGCCTTCTGATCCAGGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTCTAGCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGCCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCGAAGAGCATCTCCGTGAGGTCCAATGGATACTTGAAAATGGCACAAACCGGGACCAGCCAGGGCGGAAAGATCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAACTTGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTTTGCAACAAATGGCAGGAAACAGGCAGCTGCCCCTATGGAGACCACTGCCAGTTCGCCCATGGAATAGAGGAGCTTCGGCCTGTGATCCGCCACCCCCGCTACAAGACAGAAGTTTGCCGGATGGTCCTCGCTGGAGTCGTCTGCCCTTATGGTCATCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTCATGGGGACACTCAAGCCAACCTGCAGGACCTCCACCACCCCTAAGCTGGACAGGTGA 1056 51.33 MHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQPVPVSLPLTLYGDSTHADSSISGSKSINNHFYQTRVVQDHQEMVNRHSLCLTQLREATEEADALRQENIHLRSINHELSKHLSLLIQASVQKQYGSSDQAPPFNFVEGFRGLSLAEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQTGTSQGGKIRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTSTTPKLDR 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19369968 19372390 - MELO3C005335.2.1 Cme09g01416 338276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01416 351 SUPERFAMILY CCCH zinc finger 259 294 IPR036855 GO:0046872
Cme09g01416 351 SUPERFAMILY CCCH zinc finger 296 330 IPR036855 GO:0046872
Cme09g01416 351 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Cme09g01416 351 SMART c3hfinal6 262 289 IPR000571 GO:0046872
Cme09g01416 351 Gene3D - 256 295 - -
Cme09g01416 351 Gene3D - 296 332 - -
Cme09g01416 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 56 339 - -
Cme09g01416 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 288 IPR000571 GO:0046872
Cme09g01416 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 56 339 IPR045877 GO:0003729
Cme09g01416 351 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Cme09g01416 351 Coils Coil 101 121 - -
Cme09g01416 351 ProSiteProfiles Zinc finger C3H1-type profile. 262 290 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00917 Cme-Chr1:10621273 Cme09g01416 Cme-Chr9:19369968 6.65E-09 dispersed
Cme03g00096 Cme-Chr3:1353549 Cme09g01416 Cme-Chr9:19369968 1.28E-60 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41963 PF00642 zf-CCCH 5.40E-12 CL0537 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01416 K18753 - csv:101203274 659.833