Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01420 ATGTTGGCAAAAGTTGGTGGGGATCGTTCTTTTATCTCTTCTCCTCACTCAAGAGCTGCTTTTCGAATGTTCTTGGAAATGCTTGTGGGTCTGTTTCTCATTCTTTTATGCTGTTCTGATTGTCTTCTTCTTGTGAGCTCTTTGAATGATGAAGGGTTTGTGCTTTTAACACTTAAACAGTCCATTTCTCTAGACCCAGATGGGGCTTTCAGCAATTGGGATTCTTCTAATGAAACCCCTTGTTCTTGGAATGGGGTTGGTTGTATAAACGAAATTGTTGTTTCTGTTACCATTCCTAAGAGAAATTTGTATGGATTTCTTCCTTCTTCTCTTGGTGCTCTTTCTGGGCTTCGCCATTTGAATTTAAGAAACAATAGGCTTTTTGGGAGCTTGCCTTTTCAGCTCTTCTCTGCTCAAGCCCTACAGAGCTTGGTTCTTTATGGGAATTCCTTTTCTGGATTTGTTCCAAATGGGATTGGGAAGCTTAAATACCTTCAAACTTTGGATTTATCTCAAAATTTCTTCAATGGGTCATTACCGGCTTCAATTATACAATGCAATAGACTTAAAACCCTTGATGTTAGTCACAATAACTTCACTGGTTCACTACCACATGGATTTGGAACTAGTTTTAGTTCTTTGGAGAAACTGGATCTTTCATTTAACACATTTGATGGTTCCCTTCCTAGTGATTTGGGAAACTTGTCTAGTTTACAAGGCACTTTTGACTTGTCTCATAATCTTTTTTCTGGTTCAATTCCATCTAGCCTTGGCAACCTACCTGAAAAGGTTTACATTGATCTCAGCCATAACAATTTGAGTGGTCCGATACCCCAAAATGGTGCTCTGATGAATAGAGGACCCACTGCTTTTATTGGTAATCCTGGGCTCTGTGGTTCCCCATTGAAGAGCGCATGTTCTTCAGGAACTCTGAGTGCAAGCTCACCGTCCTTGCTTCCGTTTCTCCCAGACGATCACTCGCCAGGGATTTCTGGCGACCATGCTGAGAAGAACAGGGGATTGAGTAAGAGTGCTGTGATTGCAATAGTACTTGGCGATGTGATTGGTATATGTTTAGTTGGGCTATTGTTCTCATATTGTTATTCTAGAGTATGTTATCCAAGGAGCAAAGACAAGATCGGGCATAATTCTGATAAGGAGAAAGGAAGAAATGAGTGTTTATGCTTCAGGAAGGATGAATCTGAGTCGGTTTCACAGAATGTGGAGCAGTATGATCTTGTGCCATTGGATGCACAAGTAGGATTTGATCTTGATGAACTTCTCAAGGCATCGGCCTTTGTTATTGGCAAAAGTGGGATTGGTATAGTATACAAAGTGGTACTTGAAGATGGAGTTACGTTGGCCATACGACGATTGGGCGAAGGCGGTTCACAAAGGTTTAAAGAATTTCAAACAGAAGTAGAAGCAATAGGAAAGCTAAGGCATTCCAATCTTGTCACTCTTAGAGCCTATTATTGGTCTGTTGATGAGAAACTGCTCATTTATGATTTCATACCCAATGGAAACCTTGCAACTGCCATTCATGGAAAGCCAGGATCAGTATCTTTTACGCCATTATCCTGGTCTGCGAGATTAAAGATCATGGAAGGAATTGCTAAAGGAATTGTCTTTCTCCATGAATTCAGCCCCAAGAAGTATGTTCATGGAGATTTGAAACCCAACAACATACTGCTCAGTGAAAACATGGAAGCCAAAATTTCTGACTTTGGCCTTGCTCGACTTGCGAATATTGCTGGAGGAACCCCAACCTTACAATCAAGTCGAGTGGCATCCGAGAAACCGTTAGATCCAAAACAACCGAAAACTGTAACATCCGAGATCATTTGTAGTTCATCTTCCAACACAGGAACTTGTTATCAAGCCCCTGAATCACTCAAAGTGTTAAAACCATCCCAAAAATGGGATGTTTACTCATATGGTGTGATCTTACTTGAAATGATCACAGGAAGATTCCCATTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTTCATTGGATTCAACTATGCATTGAAGAACAGAAGCCACTTTCAGAAGTAATAGATCCATATCTAGTTCAAGATGCAGATAAAGAAGAAGAGTTCATCTCTATTCTCAAAATTGCTATGTCTTGTGCTCACGGAAGCCCCGAAAGGAGACCTACAATGAGACACGTTTCTGACGCCATTGAAAGGCTATCGTCTTCATCATCATCGAGGAACTAA 2229 40.74 MLAKVGGDRSFISSPHSRAAFRMFLEMLVGLFLILLCCSDCLLLVSSLNDEGFVLLTLKQSISLDPDGAFSNWDSSNETPCSWNGVGCINEIVVSVTIPKRNLYGFLPSSLGALSGLRHLNLRNNRLFGSLPFQLFSAQALQSLVLYGNSFSGFVPNGIGKLKYLQTLDLSQNFFNGSLPASIIQCNRLKTLDVSHNNFTGSLPHGFGTSFSSLEKLDLSFNTFDGSLPSDLGNLSSLQGTFDLSHNLFSGSIPSSLGNLPEKVYIDLSHNNLSGPIPQNGALMNRGPTAFIGNPGLCGSPLKSACSSGTLSASSPSLLPFLPDDHSPGISGDHAEKNRGLSKSAVIAIVLGDVIGICLVGLLFSYCYSRVCYPRSKDKIGHNSDKEKGRNECLCFRKDESESVSQNVEQYDLVPLDAQVGFDLDELLKASAFVIGKSGIGIVYKVVLEDGVTLAIRRLGEGGSQRFKEFQTEVEAIGKLRHSNLVTLRAYYWSVDEKLLIYDFIPNGNLATAIHGKPGSVSFTPLSWSARLKIMEGIAKGIVFLHEFSPKKYVHGDLKPNNILLSENMEAKISDFGLARLANIAGGTPTLQSSRVASEKPLDPKQPKTVTSEIICSSSSNTGTCYQAPESLKVLKPSQKWDVYSYGVILLEMITGRFPLIQVSSSSEMDLVHWIQLCIEEQKPLSEVIDPYLVQDADKEEEFISILKIAMSCAHGSPERRPTMRHVSDAIERLSSSSSSRN 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19407451 19410539 - MELO3C005339.2.1 Cme09g01420 338280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01420 742 SUPERFAMILY L domain-like 49 303 - -
Cme09g01420 742 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 31 737 - -
Cme09g01420 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 553 565 IPR008271 GO:0004672|GO:0006468
Cme09g01420 742 CDD STKc_IRAK 435 734 - -
Cme09g01420 742 ProSiteProfiles Protein kinase domain profile. 429 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01420 742 SMART serkin_6 433 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01420 742 Pfam Leucine rich repeat N-terminal domain 49 88 IPR013210 -
Cme09g01420 742 SUPERFAMILY Protein kinase-like (PK-like) 434 729 IPR011009 -
Cme09g01420 742 Gene3D Phosphorylase Kinase; domain 1 397 504 - -
Cme09g01420 742 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 31 737 - -
Cme09g01420 742 Pfam Leucine rich repeat 116 173 IPR001611 GO:0005515
Cme09g01420 742 Pfam Leucine Rich Repeat 188 207 IPR001611 GO:0005515
Cme09g01420 742 Gene3D Ribonuclease Inhibitor 48 208 IPR032675 -
Cme09g01420 742 Gene3D Transferase(Phosphotransferase) domain 1 505 742 - -
Cme09g01420 742 Gene3D Ribonuclease Inhibitor 209 308 IPR032675 -
Cme09g01420 742 Pfam Protein kinase domain 435 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme09g01420 Cme10g00230 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00089 Cme-Chr3:1304999 Cme09g01420 Cme-Chr9:19407451 0 dispersed
Cme09g01420 Cme-Chr9:19407451 Cme11g00706 Cme-Chr11:8397833 2.91E-139 dispersed
Cme08g00816 Cme-Chr8:5396510 Cme09g01420 Cme-Chr9:19407451 2.57E-14 transposed
Cme10g00646 Cme-Chr10:4122792 Cme09g01420 Cme-Chr9:19407451 0 transposed
Cme10g01445 Cme-Chr10:17621804 Cme09g01420 Cme-Chr9:19407451 1.28E-44 transposed
Cme10g00230 Cme-Chr10:1531870 Cme09g01420 Cme-Chr9:19407451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65161 PF00069 Pkinase 3.90E-33 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01420 - - csv:101203259 1313.9