Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g01446 | ATGGAACTTTCCGATGCTTCTTCGTCTTCCCATCGTTCCACTCTTTCTGACGACGAGCTTCTTCTGGCGTCGCGATACCCGAAGAAGCGAGCGGGGAGAAAGAAGTTTAAAGAAACTCGTCATCCTATCTACCGTGGTGTGCGACTGAGGAATTCAGGAAAGTGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAGACTAGGATTTGGCTTGGAACTTTCCCCACCGCTGAGATGGCTGCTCGAGCTCATGATGTTGCTGCCATCGCTCTTAGGGGAAGATCTGCTTGTCTTAATTTTGCTGACTCTGCTTCCACGCTTCACATTCCGGCTAGTGTTGATCCTAAGGATATTCAGAGGGCTGCGGCGGAGGCTGCGGAGGCATTCCGGCCGCCGGATGATCATGAGTACTTGAGGCCGGCGGTGGTGGAAGAAGGGTTTTATTTGGATGAGGAAGTGGAGTTTGGGATGCCCGGGTTGTTGACGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGTGGGGAATTACGACAACGACCACTTTGGGGCTAATTCTATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA | 606 | 51.32 | MELSDASSSSHRSTLSDDELLLASRYPKKRAGRKKFKETRHPIYRGVRLRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLHIPASVDPKDIQRAAAEAAEAFRPPDDHEYLRPAVVEEGFYLDEEVEFGMPGLLTDMAEAMLLPPPNCVGNYDNDHFGANSMDFDADMSLWSYSI | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 19673450 | 19674055 | - | MELO3C005367.2.1 | Cme09g01446 | 338306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g01446 | 201 | ProSiteProfiles | AP2/ERF domain profile. | 43 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | Gene3D | AP2/ERF domain | 43 | 101 | IPR036955 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | SMART | rav1_2 | 43 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | PANTHER | AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR | 3 | 201 | - | - | |
| Cme09g01446 | 201 | CDD | AP2 | 42 | 102 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | Pfam | AP2 domain | 42 | 92 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 3 | 201 | IPR045277 | GO:0003700 | |
| Cme09g01446 | 201 | PRINTS | Ethylene responsive element binding protein signature | 44 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | PRINTS | Ethylene responsive element binding protein signature | 66 | 82 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme09g01446 | 201 | SUPERFAMILY | DNA-binding domain | 43 | 102 | IPR016177 | GO:0003677 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme06g00959 | Cme09g01446 | CCT | |
| Cme06g00959 | Cme09g01446 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme09g01446 | Cme-Chr9:19673450 | Cme09g01717 | Cme-Chr9:21805168 | 2.83E-66 | dispersed | |
| Cme09g01446 | Cme-Chr9:19673450 | Cme06g00959 | Cme-Chr6:6823248 | 4.62E-79 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41967 | PF00847 | AP2 | 1.50E-14 | CL0081 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g01446 | - | K09286 | cmo:103504619 | 398.667 |