Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01452 ATGGGGGCTTCCTTTGCCAAGGTCTCCACCAATCTCCCACCTTCATCGTCTTCTACCTCTTCTCCTCTAGAAGACATCCCCGAAAATTGTATTTCCATTGTCTTCATGTACTTGGACCCTCCCGAGATCTGCAATCTTGCTTCTCTTAACCATGCCTTTCGCTCATCTTCTTCCGCCGATTTCGTTTGGGAATCCAAACTCCCTTCTAATTATATCTTCTTGCTTCATCGAGTTCTTCAACTTCAACAATTGACCGCCCACCCTAAGAAGGAGATCTTCGCTACGCTTACTCGCCCATCTCTATTCGATCACGCCACTAAGGAGTTTTGGTTGGATAAAAAATCTGGGGAAAATTTCATTTCGATTTCATCTAAGGCTTTGAAGATTACTGGGATTGATGATAGAAGATATTGGAATTATATTCCAACTGATGAATCAAGATGCTGA 447 42.73 MGASFAKVSTNLPPSSSSTSSPLEDIPENCISIVFMYLDPPEICNLASLNHAFRSSSSADFVWESKLPSNYIFLLHRVLQLQQLTAHPKKEIFATLTRPSLFDHATKEFWLDKKSGENFISISSKALKITGIDDRRYWNYIPTDESRC 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19729634 19731007 - MELO3C005373.2.1 Cme09g01452 338312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01452 148 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515
Cme09g01452 148 PANTHER F-BOX PROTEIN PP2-A15 1 147 - -
Cme09g01452 148 SUPERFAMILY F-box domain 16 80 IPR036047 GO:0005515
Cme09g01452 148 MobiDBLite consensus disorder prediction 1 23 - -
Cme09g01452 148 Gene3D - 6 114 - -
Cme09g01452 148 PANTHER F-BOX PROTEIN PP2-A14 1 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01452 - - - csv:101208233 260.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02700 Cme-Chr6:34222095 Cme09g01452 Cme-Chr9:19729634 5.04E-37 dispersed
Cme09g01452 Cme-Chr9:19729634 Cme02g01540 Cme-Chr2:22470404 9.34E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70