Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01458 ATGGGGAATTCATTTGGGTGTTCGGCGTCGGGGGAGAGATTGGTGTCGGCAGCGAGAGATGGCGACTTGGTTGAGGCTAAAATGCTTTTGGATTGCAACCCATGTCTCGCTAAATACTCCACTTTCGGTGGTCTTAATTCCCCTCTCCATTTTGCAGCTGCTAAAGGCCACAACGAGATTGTGTCCTTGTTGCTTGAAAATGGAGCTGATGTGAATTCCAGGAATTACTGTGGCCAGACAGCAGTGATGCAAGCTTGTCGATATGGGCACTGGGAAGTTGTACAAACTCTTCTAGTTTTCAGATGCAATGTAATGAGAGCAGACTACCTCAGTGGTCGGACTGCTCTCCATTTTGCTGCCGTAAATGGTCACGTGAGATGTCTAAGACTTATTGTGGCCGACTTTGTTCCTAGTGTTCCCTATGAGGCTATTAATAGTCAGTCAGTCATCAGCAGAAGTGATGGTGTAAATGTGAAGAACAAATGCGAACAAGGTGCTTTGTCCAAGTTTATAAATAAGGCAGCTGATGGCGGCATTACTGCTCTTCATATGGCTGCATTAAATGGATATTATGACTGTGTGCATCTTCTTCTTGACCTACATGCTAATGTTTCTGTGGTAACATTTCATTACGGGACCTCTATGGATTTGATAGGAGCTGGAAGCACTCCATTGCATTATGCAGCTTGTGGGGGTAACTTGAAGTGCTGTCAGGCAAGATGTCCTTCGACTTTAAGAATTCTCCTTGCAAGAGGTGCCTCGCGGATGACTTTAAATTGCAATGGGTGGCTTCCGTTAGATGTAGCCAGAATGTGGGGACGCCACTGGCTTGAACCTCTGCTAGCTCCCAATTCTGACTCTATATTACCGAGATTCCCCACTTCCAACCACCTATCCTTGCCTCTACTGAGTGCATTAAACATTGCCAGAGAATGCGGTTTTAAATCTATGGGAGCAACCTCCGACGATGGGGATACCTGTGCTGTCTGTCTGGAGAGAGTATGTTCCGTGGCAGCAGAGGGATGTGGGCATGAGCTTTGTGTGAGATGTGCACTCTATCTTTGTTCGACCAGCAATATCCATTCGGAAATGATTGGCTCATTGGGCTCTATTCCGTGTCCACTTTGCAGACACGGTATTATATCTTTCGTAAAATTGTCAAGTGCTACCGCAAAAGAAAAACAACTTCATCTGTCTCTTAGCATATGCAGCCCATGCATTCTTCATACCGGCGATGCCGAAGATCAAGCTTCAACTTGTACACCAGAGATCCGTAAGAACCGTGTGGCTTCAGTTTCTTCAGATGTATTTTGTCCAGTAACTTGCAGCCCATTCCCTTCTTCTGCTATTCCTTTGTGTACATGCAATGACGGTCCATGCCCGACTTTCGAGTCCCGAGACGTTGGAACAGAAGATGAATCACCCCGTCAATCACAAACAACCCCTATAGACCAGGACAAATTGGGAGGTCCAAGGTCAGAAAGAACTAGCTGTTCAAGCATGTTTTGGGGCAGGAGAAGCTGTAGCAGGGAGAATCAATGCAATTCAGAGATAAACGCTTGA 1563 46.13 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAAVNGHVRCLRLIVADFVPSVPYEAINSQSVISRSDGVNVKNKCEQGALSKFINKAADGGITALHMAALNGYYDCVHLLLDLHANVSVVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARCPSTLRILLARGASRMTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSILPRFPTSNHLSLPLLSALNIARECGFKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIHSEMIGSLGSIPCPLCRHGIISFVKLSSATAKEKQLHLSLSICSPCILHTGDAEDQASTCTPEIRKNRVASVSSDVFCPVTCSPFPSSAIPLCTCNDGPCPTFESRDVGTEDESPRQSQTTPIDQDKLGGPRSERTSCSSMFWGRRSCSRENQCNSEINA 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19805360 19810229 + MELO3C005379.2.1 Cme09g01458 338318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01458 520 ProSiteProfiles Ankyrin repeat profile. 220 260 IPR002110 GO:0005515
Cme09g01458 520 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Cme09g01458 520 Gene3D - 8 146 IPR036770 -
Cme09g01458 520 ProSiteProfiles Ankyrin repeat region circular profile. 220 254 - -
Cme09g01458 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 520 - -
Cme09g01458 520 SUPERFAMILY RING/U-box 322 382 - -
Cme09g01458 520 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Cme09g01458 520 SUPERFAMILY Ankyrin repeat 14 282 IPR036770 -
Cme09g01458 520 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Cme09g01458 520 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
Cme09g01458 520 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Cme09g01458 520 MobiDBLite consensus disorder prediction 474 498 - -
Cme09g01458 520 SMART ANK_2a 111 141 IPR002110 GO:0005515
Cme09g01458 520 SMART ANK_2a 44 73 IPR002110 GO:0005515
Cme09g01458 520 SMART ANK_2a 77 106 IPR002110 GO:0005515
Cme09g01458 520 SMART ANK_2a 177 206 IPR002110 GO:0005515
Cme09g01458 520 SMART ANK_2a 220 260 IPR002110 GO:0005515
Cme09g01458 520 ProSitePatterns Zinc finger RING-type signature. 342 351 IPR017907 -
Cme09g01458 520 Gene3D - 147 278 IPR036770 -
Cme09g01458 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 386 IPR013083 -
Cme09g01458 520 MobiDBLite consensus disorder prediction 466 498 - -
Cme09g01458 520 ProSiteProfiles Zinc finger RING-type profile. 327 377 IPR001841 -
Cme09g01458 520 PANTHER HOMEOBOX PROTEIN WARIAI 1 520 - -
Cme09g01458 520 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Cme09g01458 520 Pfam Ankyrin repeat 178 207 IPR002110 GO:0005515
Cme09g01458 520 Pfam Ankyrin repeat 112 132 IPR002110 GO:0005515
Cme09g01458 520 Pfam Ankyrin repeat 221 254 IPR002110 GO:0005515
Cme09g01458 520 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01458 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - zju:107414468 894.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01003 Cme-Chr2:14995346 Cme09g01458 Cme-Chr9:19805360 7.07E-145 dispersed
Cme04g02615 Cme-Chr4:32058804 Cme09g01458 Cme-Chr9:19805360 2.94E-34 dispersed
Cme08g02398 Cme-Chr8:30872505 Cme09g01458 Cme-Chr9:19805360 6.37E-16 dispersed
Cme09g01458 Cme-Chr9:19805360 Cme11g01294 Cme-Chr11:19780069 1.89E-43 dispersed
Cme09g01458 Cme-Chr9:19805360 Cme05g01445 Cme-Chr5:23851862 1.91E-156 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38