Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01465 ATGATCTGTTGTTCTAACATAAGACTTTTGATTTTTCAGCTGGTTGCTAGATTAACCAAGGACATAGTTGAAACATACAGAAAATGCAATCCAGAGTTTAAATATTCAGAAGAGTTAAATCTGAAGAGATTTTTGACGAGCCCATCAATTGGAGTCCTCAATGATGGCTATGATAATGTGAACTCAGATCTTATCTTGGCGGTGAACTCTGTTTTAGTCAATTTTGAAATGCAACGGAGATATGTTGTCAAAGATCTACTTGGTCATGGAACTTTTGGGCAGGTTGCTAAATGCTGGTTTGCAGAAACTAACAGCTTTGTAGCTGTGAAGATCATAAAAAACCAACCTGCATATTATCAGCAAGCACTGGTTGAAGTATCTATTTTAACTTTGTTAAATCAGAAGTACGATCCCGAGGACAAGCATCATATAGTTCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTTGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAATCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGCTGTCCAAACAGATCTTATGTGGGCTTGCTCTATTAAAAGATGCTGGTATTATTCATTGTGATTTAAAGCCAGAAAATATTCTTTTATGTACGAGTGCAAAGCCGGCAGAAATTAAAATAATAGACTTCGGATCAGCTTGCCTGGAGGACCGGACTGTTTATTCTTACATCCAGAGCCGCTACTACAGATCTCCAGAAGTCCTGCTCGGATATCAATACACCACAGCTATTGATATGTGGTCCTTTGGTTGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGGGCTTCTGAGTTTGATTTGTTGAGGCGGATGATTGACATTCTTGGGGCACAGCCTCCGGATTACGTTCTGAAGGAGGCAAAACATACTAGTAAATTTTTTAAGTTTATTGGAGGTTTCCATAATGAAAACAGTGAAATTTATTCAAGTGGTCGAAGCTCTTTTCAAGCATTAAAAGCAGACGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGAAAAGAGTATTTCAATCGAATGGACCTCGAAGCAATTGTGACTAACTACCCTTATAGAAAAAACTTGGCTGAGGAAGATATTAGGAAAGAGAGTCAAGTACGGTTGGCCTTAATTGATTTCCTAAAGGGACTTGTGGAGTTTGATCCTGCGAAAAGGTGGTCACCTTTCCAGGCCTCCAAACATCCTTTTGTGACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCAGAGACCCGGCGTTTGCCTGTTTCAAAAAACATAAAGGTAGATGACCATCATCCAGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCCCCCAATCTTGCAGGTAGGAACAGAGTTCTTCAGAGCAGCCCACATTTTCAAATGGTACCATATCCCCATGCCAACAGTTATGGCAGCGTTGGAAGTCATGGTAGCTACAATGAAAGTATTGGGTTTGGAAACAGCTACGGAAGTTACGGGGACAATGGTATGCTTGCATATTATTCGCCTGTTGGCCCATCTGGAATGAATATGCATCCACAAGCAAGAATATCAGTGCTTGCCAGTAGCCCAGATACTCGACAGAGGATTTTCCAATTATCTCATGGTAATGGGATTGGTGTGAGCCCATCAACTGGGAACTTTGCGCCACTGCCCCTAGGAACGAGTCCATCACAGTTTACTCCACCAAGCAGTTATGGTCAAGTTTCAATGGGCTCACCTGGACATTATGGGCCAACTTCTCCTGCTAGGGGTAGCTGTCAAGGGTCGCCCCTGGGAAAAATGGCTACAGTTGGTCAATTTAATAGAAGGAAATTTTGGGATTACCCTGGCACTCATGATGGTTCTTCATCTTCCCACTGGCAAGGGCAATCTACTGAAGGCACAAGCTACAGTCAAGCAGACGGGAACTCTTTACATGGTTGCTCACCATCTCATCTGCCACCTAGTAGCAATGCCACCAGCTGGAAGCAGCAGCCAGTAGGTAGTGGAAGCTCTGCTGGATACCCTACCATTCAGAGTATGCCGGGATCTCATTTGCCTGGTTCAAATATGCAATTTTCACAATCAACGGATGTGGCTCGTAATAAGTCTGAATTGCCCGATCCTGGAGATTGGGATCCCAATTATAGCGATGAACTACTCCTCCAAGATGATGGTGATTCAAATGTCAGCAGCATTTCGACTGATTTTAGCAACATGCATGTGGGTTCATCAAATCCATCTACTGGGATTGGAAGATTTAGTGTGCCAAGCCCTAGTTTGAATTTATCCTCACAAAGAAAAACTGGACCTGTCCAAGCATTTCCGCATGTAGAGGTGGGTAGTCCGCCCTCAGCTCAAGATTTGCACACTGGATATGCTCGTTCCTCATCGAAGCATTCCCATCTCATGCCTCATAATTCACACAATTCCCCAAGCCGCTTGGGACAGCAACCTGTTCAGCGGTTCAACCAAGGGAGAAGCACAAACGTTCGAGGTTACGAATGGAACCCTGTGAAGATCCAACCACCCCTTCCCACCTATAATTCTGGAGGCCCTCGTTCTCCTGGAAGTGGCTCCTTCAGCAGTGGCATGTCATGGGGGTTTAGAGCGAATCAACCTGTTACAAGCATTCCTCCAGCATCCCGTGGAAGAAAAGACTATGGGAGGATCTAG 2721 43.66 MICCSNIRLLIFQLVARLTKDIVETYRKCNPEFKYSEELNLKRFLTSPSIGVLNDGYDNVNSDLILAVNSVLVNFEMQRRYVVKDLLGHGTFGQVAKCWFAETNSFVAVKIIKNQPAYYQQALVEVSILTLLNQKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQILCGLALLKDAGIIHCDLKPENILLCTSAKPAEIKIIDFGSACLEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGAQPPDYVLKEAKHTSKFFKFIGGFHNENSEIYSSGRSSFQALKADEYEAREMKKPSIGKEYFNRMDLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPETRRLPVSKNIKVDDHHPGGGHWFAAGLSPNLAGRNRVLQSSPHFQMVPYPHANSYGSVGSHGSYNESIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQARISVLASSPDTRQRIFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSMGSPGHYGPTSPARGSCQGSPLGKMATVGQFNRRKFWDYPGTHDGSSSSHWQGQSTEGTSYSQADGNSLHGCSPSHLPPSSNATSWKQQPVGSGSSAGYPTIQSMPGSHLPGSNMQFSQSTDVARNKSELPDPGDWDPNYSDELLLQDDGDSNVSSISTDFSNMHVGSSNPSTGIGRFSVPSPSLNLSSQRKTGPVQAFPHVEVGSPPSAQDLHTGYARSSSKHSHLMPHNSHNSPSRLGQQPVQRFNQGRSTNVRGYEWNPVKIQPPLPTYNSGGPRSPGSGSFSSGMSWGFRANQPVTSIPPASRGRKDYGRI 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19849599 19860872 - MELO3C005386.2.1 Cme09g01465 338325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01465 906 MobiDBLite consensus disorder prediction 573 615 - -
Cme09g01465 906 PANTHER DUAL SPECIFICITY PROTEIN KINASE 14 820 - -
Cme09g01465 906 SUPERFAMILY Protein kinase-like (PK-like) 74 442 IPR011009 -
Cme09g01465 906 ProSiteProfiles Protein kinase domain profile. 81 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01465 906 SMART serkin_6 81 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01465 906 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Cme09g01465 906 MobiDBLite consensus disorder prediction 630 750 - -
Cme09g01465 906 Pfam Protein kinase domain 81 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01465 906 MobiDBLite consensus disorder prediction 866 894 - -
Cme09g01465 906 Gene3D Transferase(Phosphotransferase) domain 1 162 423 - -
Cme09g01465 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cme09g01465 906 Gene3D Phosphorylase Kinase; domain 1 46 161 - -
Cme09g01465 906 MobiDBLite consensus disorder prediction 775 906 - -
Cme09g01465 906 MobiDBLite consensus disorder prediction 804 847 - -
Cme09g01465 906 CDD PKc_YAK1 81 422 - -
Cme09g01465 906 PANTHER BNAC04G29850D PROTEIN 14 820 - -
Cme09g01465 906 MobiDBLite consensus disorder prediction 573 596 - -
Cme09g01465 906 MobiDBLite consensus disorder prediction 633 717 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01465 K18670 YAK1; dual specificity protein kinase YAK1 [EC:2.7.12.1] - csv:101210441 1801.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme09g01465 Cme10g00272 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01465 Cme-Chr9:19849599 Cme11g02550 Cme-Chr11:31900268 9.50E-31 dispersed
Cme03g00253 Cme-Chr3:3233663 Cme09g01465 Cme-Chr9:19849599 2.92E-56 transposed
Cme04g02595 Cme-Chr4:31931103 Cme09g01465 Cme-Chr9:19849599 4.85E-48 transposed
Cme08g00992 Cme-Chr8:6485688 Cme09g01465 Cme-Chr9:19849599 4.86E-15 transposed
Cme08g01240 Cme-Chr8:8840591 Cme09g01465 Cme-Chr9:19849599 2.08E-13 transposed
Cme11g01868 Cme-Chr11:26862864 Cme09g01465 Cme-Chr9:19849599 5.36E-14 transposed
Cme12g01645 Cme-Chr12:23563504 Cme09g01465 Cme-Chr9:19849599 1.18E-48 transposed
Cme12g02046 Cme-Chr12:25927326 Cme09g01465 Cme-Chr9:19849599 9.50E-12 transposed
Cme10g00272 Cme-Chr10:1774235 Cme09g01465 Cme-Chr9:19849599 5.56E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65162 PF00069 Pkinase 3.40E-50 CL0016 Cme PK