Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01472 ATGGTTCGTGGGAAAGTAGAAATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGAAGAAATGGACTTCTGAAAAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCCCAAAAAGGAAGACTCTATGAATTCTCAAGCTCCGACATGCAAAAGACAATCGAACGCTATCGTAAGCATGGGAAAGAGGGACAAAGCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGAGATGACTGCAAAGAAAATCGAACAACTTGAGAAATCCCAACAGAAGCTTTTAGGACGTGGGTTGGATTCTTGTTCTTTTGAGGAACTTCGAGAGATTGAAAGACAATTGGTACTTAGCTTAACTCGTATTAGAGAAACTAAGGCTCAGCTATTCAAGGACCAAAAGGAGAAGCTGATTGAAAAGATCATTGTACAATAG 483 38.72 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRKHGKEGQSNPFRSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEELREIERQLVLSLTRIRETKAQLFKDQKEKLIEKIIVQ 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 19925518 19933888 + MELO3C005393.2.1 Cme09g01472 338332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01472 160 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme09g01472 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme09g01472 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme09g01472 160 Pfam K-box region 88 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme09g01472 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme09g01472 160 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Cme09g01472 160 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme09g01472 160 PANTHER MADS BOX PROTEIN 1 156 - -
Cme09g01472 160 Coils Coil 87 107 - -
Cme09g01472 160 PANTHER MADS-BOX PROTEIN SOC1 1 156 - -
Cme09g01472 160 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Cme09g01472 160 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme09g01472 160 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Cme09g01472 160 ProSiteProfiles K-box domain profile. 87 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme09g01472 160 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00949 Cme09g01472 CCT
Cme06g00949 Cme09g01472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01472 Cme-Chr9:19925518 Cme11g02531 Cme-Chr11:31756996 4.80E-53 dispersed
Cme12g01581 Cme-Chr12:23157696 Cme09g01472 Cme-Chr9:19925518 8.37E-36 dispersed
Cme06g00949 Cme-Chr6:6728550 Cme09g01472 Cme-Chr9:19925518 3.36E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41968 PF01486 K-box 1.10E-17 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01472 - - cmo:103504648 304.293