Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01500 ATGGAAGAGAAAGAGGGAGGAGTGGATTTTGGGTTTGCAGTAAAAGTAAGCCAAGCTCCAGAGAGCTTCGGGATGATGGACTCCAGACCTGAAAATTCAAGCACAGATGGTGAGACACCGCCGCAGCAGCCGCCGGCGAGTGTTCCATCGGCGGGAGCTGCCGATGGGAAGAAGAAAAGAGGGAGACCAAGAAAGTACGGTCCTGATGGGACTGTAGCTCCTACATTGTCACCAATGCCGATTTCGTCATCCATTCCACTGCCCGGAGAATTTGCGGGTTGGAAACGAGGAAGAGGACGGTCGGTAGAGTCCATCAAGAAGTCACGGAAGTTCGAGTATGAGATTCCTGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCTATTTGTATACTCTCCGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCGTCTGGGGGTACTTTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCGGAGATTGGTGGAACAAAGAGCCGATCAGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGAGTGATGGGCGGAGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAGGAAGAGTAGAATGGAACCTACACTGAACGCAATTTCGCCTCCAGCCGACATTCTTTCTGGTGAAGGGACAAAGGAAGTATTTGGAGGAGTGAAGCCCATAGTCCCATCTACTCTAAATGGAGATAGAACTGCTTCTTTAGACCCAACTCCAGCTTTTAAAACTCCCCAAGTTAACGACAAATCACATTTTCCACAAGAATCAAGAGGTGTTCTCAACCATTCAAACCACGAGGTTTCTTGTTGA 1008 48.41 MEEKEGGVDFGFAVKVSQAPESFGMMDSRPENSSTDGETPPQQPPASVPSAGAADGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLPGEFAGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPRKSRMEPTLNAISPPADILSGEGTKEVFGGVKPIVPSTLNGDRTASLDPTPAFKTPQVNDKSHFPQESRGVLNHSNHEVSC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20170295 20176099 - MELO3C005419.2.1 Cme09g01500 338360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01500 335 MobiDBLite consensus disorder prediction 1 84 - -
Cme09g01500 335 MobiDBLite consensus disorder prediction 27 41 - -
Cme09g01500 335 Gene3D - 130 261 - -
Cme09g01500 335 MobiDBLite consensus disorder prediction 293 335 - -
Cme09g01500 335 MobiDBLite consensus disorder prediction 244 274 - -
Cme09g01500 335 CDD DUF296 129 243 IPR005175 -
Cme09g01500 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 258 - -
Cme09g01500 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 320 - -
Cme09g01500 335 MobiDBLite consensus disorder prediction 288 335 - -
Cme09g01500 335 ProSiteProfiles PPC domain profile profile. 125 269 IPR005175 -
Cme09g01500 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 320 IPR039605 GO:0003680
Cme09g01500 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00921 Cme09g01500 CCT
Cme06g00921 Cme09g01500 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01500 Cme-Chr9:20170295 Cme09g01675 Cme-Chr9:21436169 2.60E-83 dispersed
Cme09g01500 Cme-Chr9:20170295 Cme06g00921 Cme-Chr6:6454924 2.39E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01500 - - csv:101211908 593.578