Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01509 ATGCTTTTTCTACACCTCCATTTTTGTTTCTCCATAACTGCAGCAGCTTGCATCCAAAAGGAGCGTGAAGCTCTTCTTCAATTCAAGAATAGTTTCTATAAAGATCCTTCTCATCGCTTGGCTTCGTGGAATAATGGAACTGATTGCTGTAATTGGAAAGGAGTGGGTTGCAGTCAAATTACTGGACATGTTACTATCATTGATCTTCGATACGATTATCAGGTCAACTTCTACGACGACTCATCACCTTTATATAGCAATAATTCCATTGATTCTAATTGGTTGGAAAAGTTCAAAAACTTAAAGTCCCTTAACCTTGATAACAGCAGCATTCACGGCCCAATTCCTAATTGGCTTGGAAACTTATCAAGCCTTGAACATTTACATCTTTCAGATAATGCTTTAACCGGAGCAATTCCAACCTCATTTGGAAGATTATTAAACTTGAGAGCATTAGATCTTTCCAAAAATAGATTAGAAGGGGGTAATCTTTCTTATATTCAACAACTGTACTTGAGAAACAATAATTTTGAGGGGTCCATGCCAATTGTATTGAAGAATTCTCACATTTTGGATACGTTAGATCTTGAAGGAAACAAATTCTCTGGAAATATCCCTACATGGGCTGGCAATAATCTTCGAAATTTGCAATTGCTAATACTACGAGGTAATTTGTTCAATGGAACCATACCTTCAACTCTATGCAAACTCACTAGGTTGCAGTTATTGGATCTTGCACACAATCAATTAGAAGGAAGCATTCCACCAAATCTCAGCAACTTCAATGTAATGACAGGAAAAGTAAACTATGGTAATTACTTCTTTTGTAGAAGTAGTTTACTCTGCGGTGGTGGTGATACAAAATATCTAGTACAACACATCAAATCAAGGGATTTAAATTACTCTGTGATGCAACTAAAAGAATTTTTGGTAAATATAGACCTCTCCGGAAACCACTTGGTTGGTTCCATTCCAAGTGAGATAATCCTGCTTAAAGGATTATTTGGATTGAATTTGTCCCACAATAATCTAACCGGGACAATTCCTGCAGAAATAGGAGAAATGGGGGTGTTAGAATCACTCGACTTATCTTTCAACCAACTTTCAGGATCAATTCCTAGGAGCATATCAAAGCTAAGTAAATTAGGAGTGTTGATATTATCTCACAACAATCTTTCTGGAAAAATTCCTCGTGAAGGTCATCTCTCCACATTCAATGAAGCTTCAAGTTTTGATGATAATCCATATCTATGCGGGGATCCACTTCCAACAAAATGTGCAATTGAGAATTCATCGGAACCACCGTTGAAAAAGATTGACAATGTGGATCAAGAGGAGGATAAATGGGAGAAGTGGTTGCTTTACATAATGATAATACTCGGATATATAATTGGATTTTGGGGAGTTGTTGGAAGTTTAATATTGAAGAAGAGTTGGAGATATAAATATTTCAAGTTTGTGGAGGATGCTTCTTACAAAGTTCATGCAGCAACTGGGAGGAGCATTCAATTCCTT 1515 36.63 MLFLHLHFCFSITAAACIQKEREALLQFKNSFYKDPSHRLASWNNGTDCCNWKGVGCSQITGHVTIIDLRYDYQVNFYDDSSPLYSNNSIDSNWLEKFKNLKSLNLDNSSIHGPIPNWLGNLSSLEHLHLSDNALTGAIPTSFGRLLNLRALDLSKNRLEGGNLSYIQQLYLRNNNFEGSMPIVLKNSHILDTLDLEGNKFSGNIPTWAGNNLRNLQLLILRGNLFNGTIPSTLCKLTRLQLLDLAHNQLEGSIPPNLSNFNVMTGKVNYGNYFFCRSSLLCGGGDTKYLVQHIKSRDLNYSVMQLKEFLVNIDLSGNHLVGSIPSEIILLKGLFGLNLSHNNLTGTIPAEIGEMGVLESLDLSFNQLSGSIPRSISKLSKLGVLILSHNNLSGKIPREGHLSTFNEASSFDDNPYLCGDPLPTKCAIENSSEPPLKKIDNVDQEEDKWEKWLLYIMIILGYIIGFWGVVGSLILKKSWRYKYFKFVEDASYKVHAATGRSIQFL 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20235669 20238509 + MELO3C005428.2.1 Cme09g01509 338369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01509 505 Pfam Leucine rich repeat N-terminal domain 20 58 IPR013210 -
Cme09g01509 505 Pfam Leucine rich repeat 310 368 IPR001611 GO:0005515
Cme09g01509 505 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Cme09g01509 505 Gene3D Ribonuclease Inhibitor 84 434 IPR032675 -
Cme09g01509 505 PRINTS Leucine-rich repeat signature 149 162 - -
Cme09g01509 505 PRINTS Leucine-rich repeat signature 237 250 - -
Cme09g01509 505 Gene3D Ribonuclease Inhibitor 14 83 IPR032675 -
Cme09g01509 505 Pfam Leucine Rich Repeat 239 261 IPR001611 GO:0005515
Cme09g01509 505 SUPERFAMILY L domain-like 16 422 - -
Cme09g01509 505 SMART LRR_typ_2 355 379 IPR003591 -
Cme09g01509 505 SMART LRR_typ_2 122 145 IPR003591 -
Cme09g01509 505 SMART LRR_typ_2 237 261 IPR003591 -
Cme09g01509 505 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 6 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01509 - - - cmo:103483049 674.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01201 Cme-Chr6:9467660 Cme09g01509 Cme-Chr9:20235669 2.15E-48 dispersed
Cme09g01506 Cme-Chr9:20226188 Cme09g01509 Cme-Chr9:20235669 2.46E-37 dispersed
Cme09g01509 Cme-Chr9:20235669 Cme09g01534 Cme-Chr9:20434381 2.76E-26 dispersed
Cme09g01508 Cme-Chr9:20228527 Cme09g01509 Cme-Chr9:20235669 1.73E-07 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g535 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00475 Cam01g0494 Cec01g0484 Cco01g0505 Clacu01g0493 Cmu01g0469 Cre09g2041 . . . . . Csa05g00532 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00509 . . Cme09g01509
Vvi16g670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00122 Chy09g00982 . . . . . . . . . . . . . . . . . . Bhi12g00033 . . . . . . . . . . . . . . . . Cme09g01509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143