Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01517 ATGGAACCAAAATCGCAATTTCCAAACCTCTGGGGGTACGACGGGAAGCTAGTATACGACGAGATAATCCAAGCAACAGAGAATTTCGATGACAAATACTGCATCGGAAGAGGAGGGTCAGGAACAGTTTACAAAGCCGAAATGTCGAGTGGTGAGGTATTCGCAGTAAAGAAGCTCGACTTTTGGGACAGTGACATGGGGATGGAGAATTTGAAGAGTTTCAAAAGGGAAGTCGCGACACTAAGCGAGGTCCGACATCGAAACATAGTTAAGCTTTACGGGTTCTGCTCGAGAGGTGAAAACACGTTTTTGGTATACGATTTCATCGAAAGAGGGAGTTTATGGGAAGTTTTGAGAAGTGAAGAGAAGGTGATAGAGGTTGACTGGGTAAAGAGAGTTGAGATACTGAAGGGTGTGGCTGAGGCTTTGTGTTATTTGCATCATGACTGCGTTCCGGCGATCGTCCACTGTGATGTGACGACGAAGAATGTTTTGTTGGATGTGGATTTCGAAGCTCATGTGGCGGATTTTGGGACTGCAAGGTTTTTGAAGTTTGATGCTTTGCATTCCACTGATGTTGCTGGCACTCATGGCTATATGGCTCCAGAGCTTGCATATACGAGCAAAGTAACAGAAAAATGTGACGTTTATAGCTTTGGAGTGGTAAGTTTGGAAGTATTGATGGGAAGACATCCAGGAGAAGCCCTTCTACCTTTACAAAGTTCCGCACAAAAGGCCATTGAGATGGAAGCACTGTTGGATCCTCGTCTTGCATGCCCTCAAAGAGGAAAGCTTTTAAGTGAATTGAGCTCACTTGTGAGTATAGCAATCTCTTGTGTGCAAGCTGAACCTCATTTACGTCCCAATATGCTCAACGTCTGTCGTTTGATGGGATTGAATTGA 903 44.63 MEPKSQFPNLWGYDGKLVYDEIIQATENFDDKYCIGRGGSGTVYKAEMSSGEVFAVKKLDFWDSDMGMENLKSFKREVATLSEVRHRNIVKLYGFCSRGENTFLVYDFIERGSLWEVLRSEEKVIEVDWVKRVEILKGVAEALCYLHHDCVPAIVHCDVTTKNVLLDVDFEAHVADFGTARFLKFDALHSTDVAGTHGYMAPELAYTSKVTEKCDVYSFGVVSLEVLMGRHPGEALLPLQSSAQKAIEMEALLDPRLACPQRGKLLSELSSLVSIAISCVQAEPHLRPNMLNVCRLMGLN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20315292 20316785 + MELO3C005436.2.1 Cme09g01517 338377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01517 300 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 296 - -
Cme09g01517 300 Gene3D Transferase(Phosphotransferase) domain 1 109 299 - -
Cme09g01517 300 SUPERFAMILY Protein kinase-like (PK-like) 13 295 IPR011009 -
Cme09g01517 300 ProSitePatterns Tyrosine protein kinases specific active-site signature. 154 166 IPR008266 GO:0004672|GO:0006468
Cme09g01517 300 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Cme09g01517 300 Gene3D Phosphorylase Kinase; domain 1 5 108 - -
Cme09g01517 300 Pfam Protein kinase domain 32 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01517 300 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 7 296 - -
Cme09g01517 300 ProSiteProfiles Protein kinase domain profile. 29 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01517 300 PIRSF ILK 16 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01421 Cme-Chr7:19918137 Cme09g01517 Cme-Chr9:20315292 3.93E-29 dispersed
Cme09g01517 Cme-Chr9:20315292 Cme06g00884 Cme-Chr6:6172715 3.42E-123 dispersed
Cme09g01517 Cme-Chr9:20315292 Cme09g01519 Cme-Chr9:20325944 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65166 PF00069 Pkinase 1.60E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01517 - - cmo:103504688 610.142