Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01533 ATGATACTGCTTCTTCTGCAGCTCCAGTTTTGTTTGTCCATAGCAGCAGCAGCTTGCATCCAAAAGGAGCGTGAAGCTCTTCTTCAATTCAAGAATAGTTTCTATAAAGATCCTTCTCATCGCTTGGCTTCGTGGAATAATGGAACTGATTGCTGTAATTGGAAAGGAGTGGGTTGCAATCAAATTACTGGACATGTTACTATCATTGATCTTCGATTGGATATTGATCAGGTCGGCTTCCGCATAGCACCTTTATATAGCAATAATTCCATTCATTCTAGTTTTCTTGAGTTGAAATACTTAAATTATTTGGATTTGAGTGGGAACGACTTCAACTATACTCAAATCCCCAACTTTTTAGGTTCGATGGTTGAATTAACATATCTTAATCTTTCTCGTACATTCTTTTCGAACAAAATTTCTCCTCATTTAGGAAATCTTACTAAATTGGAGACTCTTGATATATCATTTAATTTGCTAGAAACTAATGGTGATGTTGAATGGATACCTCATCTTTCATCCTTAAAGTTCCTTTCCTTGAGAGGGATGGACTTTTCCAACACTTCAAGTTTGATGCAAGTCCTAAATTATCTTCCTTTGTTGGTGTCTTTGAGATTGAATTATTGTAACCTTCAAAACATCCATTTCTCTTCAAGTTCTTGGTTGAATTATTCATCATTTCTTTCTAGAATTCAACTTCTAGACTTATCTTCCAATAAGTTAAATGGTCAAATTCCTAAGGCTTTTCAGAATATGACTTCTTTGAAATATCTAGACCTTTCAAATAATCAGTTCAATTCTATTTTTGAAGGTGGAATTTCTACCTTCATTAAAAATAATTTTGGCCTAAAAGTACTTGATTTATCGTTTAACATTAATCTTGGTGGAGATGTGTTTGGAAGTCGTTATGGGAATCAATCTACGGGTTGCAATCTTCAAGTGCTTAACTTAGGATATACATCTTTTAAAACCAAAATTCCTGATTGGTTGGGGAAGTTCAAAAACATGAAGTCACTTGATCTTGAAGATAGTCAGATTTATGGTCCAATTCCGGCTTCACTTGGAAATTTATCAAGCCTTGAATATTTAGATCTATCGAGGAATGCTTTAACTGGAACAATTCCAACCGCATTTGGAAGATTATTGAACTTGAGAAAATTATATCTACAAGAAAATGGACTAATGGAGGTGGGCCACGAATGTTTTGCCCAACTTGAGAAGTTGGAGGAATTAGACATATCAAGAAACTTGCTCAAAGGCATTCTTACAGAATTTCATTTTGCCAATCTCTATCAGTTGCATATCTTAAGTATTGGCTACAATGAGCTTCTTCAATTGGACATGAAATCTAATTGGAATCCTCCCTTTCAATTACAAGTCTTTGATGCTTCATCATGTATCGGTTGTGTTAGGAGTGAGTTTCCTCAATGGCTTCAGACCCAAAAAAGATTGGTTGAATTATGGTTATCCAACACAAGTCTCTCAATTAGTTGCATACCAACATGGTTTCAACCACAGAATCTCACCGATTTGGATCTCTCGCACAACAAAATGGCAGGACCATTTTTTACTACCATTGTCAATCAAATGCCCAATTTGAGACGGTTGTTTCTCAATGATAATCTTATCAATGATTCTTTATTATCTCCACTCTGTCAATTGAAGAATTTGGACACTTTGGATCTTTCAAACAATTGGCTATCTGGAATCGTTCAAGGTTGTTTGTTGACTTCAAATTTGTTTGCTTTGGATTTATCATCTAACAACTTTTCAGGGACCTTTCCTTATTCACATGGAAATGATCTTTCTCGTATTGAAGTACTATATTTGAGAAACAATAATTTTGAGGGATCCATGCCAATTATATTGAAAAAATCCAAATTTTTGGAAACTTTAGATCTTAAGGGAAACAAATTCTCTGGAAACATACCCACATGGATAGGGGATAAACTTGAACGTTTGAAAATTCTAATACTGCGAAGTAATTTGTTCAATGGTACTATTCCTTCAAGCATATGCAATCTTACTGACTTGCAAATTTTGGATCTAGCGCACAACCAATTTGATGGAATTGTCCCGTCAAAGCTCAGTAATTTCAACGTAATGACAAGAAAAGATACTGATGGATTCCCTGCTATTTGTAGGAATGGTAATCTCGACCATGGAGTAGTATGCATTGATGATCTATCCAATAACTCTCTAGTAGGTTTCATACCAAGTGAGATAACAAAGCTTAAAAGGTTGATTGGATTGAATTTGTCCCACAACAATATTATCGGGATAGTTCCTGCTGAAATTGGAGAAATGGAGTCATTAGAATCACTTGACCTATCTTTCAATCAGCTTTCTGGGCCAATTCCTCTTAGCTTATCAAAATTAAATTCATTAGGCACGTTGAAGTTGTCCCACAACAATTTCTCAGGCAACATTCCTCGAGAGGGTCATCTCTCCACATTCAATGAAGCTTCAAGTTTTGACAATAATTCATATCTTTGTGGGGATCCACTTCCAATAAAATGTGTGATTGAAAATTCATCTGAACTGCCGTTCAATAAAATTGACAACCAAGACCAAGACGAAGATAAATGGGAGAAGTGGTTGCTTTACATTTCGATAATTGTTGGATTTATAGTTGGATTTTGGGGAGCAGTTGGAAGTTTAATATTGAAGAAGAGTTGGAGATATGCTTATTTCAAGTATGGAGAGGAGGCTTATTTCAAGGTTCATGCAACAATCTGGAGGAGCATAGAAATGCTTAAAGGAATGTGCATTAGCAAACGAATTTGGTAA 2790 35.38 MILLLLQLQFCLSIAAAACIQKEREALLQFKNSFYKDPSHRLASWNNGTDCCNWKGVGCNQITGHVTIIDLRLDIDQVGFRIAPLYSNNSIHSSFLELKYLNYLDLSGNDFNYTQIPNFLGSMVELTYLNLSRTFFSNKISPHLGNLTKLETLDISFNLLETNGDVEWIPHLSSLKFLSLRGMDFSNTSSLMQVLNYLPLLVSLRLNYCNLQNIHFSSSSWLNYSSFLSRIQLLDLSSNKLNGQIPKAFQNMTSLKYLDLSNNQFNSIFEGGISTFIKNNFGLKVLDLSFNINLGGDVFGSRYGNQSTGCNLQVLNLGYTSFKTKIPDWLGKFKNMKSLDLEDSQIYGPIPASLGNLSSLEYLDLSRNALTGTIPTAFGRLLNLRKLYLQENGLMEVGHECFAQLEKLEELDISRNLLKGILTEFHFANLYQLHILSIGYNELLQLDMKSNWNPPFQLQVFDASSCIGCVRSEFPQWLQTQKRLVELWLSNTSLSISCIPTWFQPQNLTDLDLSHNKMAGPFFTTIVNQMPNLRRLFLNDNLINDSLLSPLCQLKNLDTLDLSNNWLSGIVQGCLLTSNLFALDLSSNNFSGTFPYSHGNDLSRIEVLYLRNNNFEGSMPIILKKSKFLETLDLKGNKFSGNIPTWIGDKLERLKILILRSNLFNGTIPSSICNLTDLQILDLAHNQFDGIVPSKLSNFNVMTRKDTDGFPAICRNGNLDHGVVCIDDLSNNSLVGFIPSEITKLKRLIGLNLSHNNIIGIVPAEIGEMESLESLDLSFNQLSGPIPLSLSKLNSLGTLKLSHNNFSGNIPREGHLSTFNEASSFDNNSYLCGDPLPIKCVIENSSELPFNKIDNQDQDEDKWEKWLLYISIIVGFIVGFWGAVGSLILKKSWRYAYFKYGEEAYFKVHATIWRSIEMLKGMCISKRIW 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20427143 20430013 - MELO3C005450.2.1 Cme09g01533 338393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01533 929 ProSiteProfiles Leucine-rich repeat profile. 556 577 IPR001611 GO:0005515
Cme09g01533 929 SUPERFAMILY RNI-like 227 569 - -
Cme09g01533 929 Gene3D Ribonuclease Inhibitor 397 848 IPR032675 -
Cme09g01533 929 ProSiteProfiles Leucine-rich repeat profile. 771 792 IPR001611 GO:0005515
Cme09g01533 929 PRINTS Leucine-rich repeat signature 357 370 - -
Cme09g01533 929 PRINTS Leucine-rich repeat signature 255 268 - -
Cme09g01533 929 PANTHER LRR RECEPTOR-LIKE KINASE 232 394 - -
Cme09g01533 929 PANTHER LRR RECEPTOR-LIKE KINASE 378 709 - -
Cme09g01533 929 PANTHER LRR RECEPTOR-LIKE KINASE 724 905 - -
Cme09g01533 929 SMART LRR_sd22_2 381 413 - -
Cme09g01533 929 SMART LRR_sd22_2 675 701 - -
Cme09g01533 929 SMART LRR_sd22_2 333 365 - -
Cme09g01533 929 SMART LRR_sd22_2 147 168 - -
Cme09g01533 929 SMART LRR_sd22_2 228 254 - -
Cme09g01533 929 SMART LRR_sd22_2 769 790 - -
Cme09g01533 929 SMART LRR_sd22_2 530 559 - -
Cme09g01533 929 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 378 709 - -
Cme09g01533 929 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 724 905 - -
Cme09g01533 929 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 232 394 - -
Cme09g01533 929 SUPERFAMILY L domain-like 475 811 - -
Cme09g01533 929 Gene3D Ribonuclease Inhibitor 18 298 IPR032675 -
Cme09g01533 929 ProSiteProfiles Leucine-rich repeat profile. 254 275 IPR001611 GO:0005515
Cme09g01533 929 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 14 291 - -
Cme09g01533 929 PANTHER LRR RECEPTOR-LIKE KINASE 14 291 - -
Cme09g01533 929 SUPERFAMILY L domain-like 18 293 - -
Cme09g01533 929 Pfam Leucine rich repeat 335 394 IPR001611 GO:0005515
Cme09g01533 929 Pfam Leucine rich repeat 629 688 IPR001611 GO:0005515
Cme09g01533 929 Pfam Leucine rich repeat 201 265 IPR001611 GO:0005515
Cme09g01533 929 Pfam Leucine rich repeat 728 782 IPR001611 GO:0005515
Cme09g01533 929 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Cme09g01533 929 Gene3D Ribonuclease Inhibitor 301 396 IPR032675 -
Cme09g01533 929 SMART LRR_typ_2 769 793 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 405 427 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 675 698 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 530 550 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 554 577 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 98 123 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 357 380 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 228 251 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 602 625 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 252 271 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 198 221 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 381 404 IPR003591 -
Cme09g01533 929 SMART LRR_typ_2 147 170 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01533 - - - csv:101215046 1513.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01507 Cme-Chr9:20228470 Cme09g01533 Cme-Chr9:20427143 0 dispersed
Cme09g01508 Cme-Chr9:20228527 Cme09g01533 Cme-Chr9:20427143 4.80E-08 dispersed
Cme09g01533 Cme-Chr9:20427143 Cme09g01535 Cme-Chr9:20442729 0 dispersed
Cme09g01536 Cme-Chr9:20447829 Cme09g01533 Cme-Chr9:20427143 8.49E-19 dispersed
Cme09g01533 Cme-Chr9:20427143 Cme09g01534 Cme-Chr9:20434381 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01011 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01533
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143