Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01544 ATGGCTCAAAAGCTTCATTTTTCTATCCTTCTTTTTTCTTTGTTCATCCTCTCATCAACTTCCCTACCTTTCTCAACCAAAACTAACAAGAAAGCCATCGATTTATGGTGCAGCCGAACCCCATATCCCGACGTATGCAAAAACTTCTTCAACGACGGTCAATTCGACCCGAAAAATCTCTTAGATATCCAAAAAACAGCTCTCAAAATCGCCATGGAAAGAGCTATAAGAACCGAAACCCTCACAAAAGCCTTAGGCCAAAAGTGCCGCAACAAGAAAGAAAGAGCTGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGACCATTGCTCCAACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACGTGCCGTGCTGGGTTCGTGGACCTGGGGATCAAAGATTACGGCGTAGTCTTCCCTTTTTTGGCGAACAATAATATCACAAAACTTATAAGTAATAGTTTGGCTATGAATAATTGTTCTGAGAGTGATGAGGGGAATACGAGTGATGAAGGGTTTCCCAAGTGGGTTCGGGGTGGGGACAGACGGTTGTTGCAGGCGGCGGAGCCTAAGGCAGATTTGGTGGTGGCGCAGGACGGGTCGGGGAATTATAAGACGGTGCAAGCAGCGGTGGACGCGGCGGGGAAAAGGAAAGGGAGTGGGAGATTTGTGATACGTATTAAGAAAGGAGTCTATAAAGAGAATGTAGTGATAAAAGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGATATACAATTATTACTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACCGGTGAACGTTTCATTGCTCGTGGGATCACATTCCGCAACACCGCCGGACCCCAAAACCACCAAGCTGTTGCCCTTCGGTCAGGCGCCGATCTCTCGGTCTTCTTCCGGTGCGGCTTTGAAGGATACCAAGACACTCTCTACGCCCATTCACAGAGACAATTCTACAGAGAATGCTACATATACGGCACAATCGATTTCATCTTCGGCAACGCGGCCGTCGTTCTCCAAAACTGCATGATCTACGCAAGAAAACCAATGCAAGGGCAACAATGCGTTGTCACAGCCCAAGGCCGAACGGACCCAAACCAAAACACAGGGATCTCAATCCACAACTCGAGAGTGATGGCTGCAGACGACCTAAAACCGGTTATCAAGTCGGTTAGAACGTACTTGGGGAGGCCATGGAAGGAGTACTCGAGAACGGTATACTTGCAAAGCTTCATGGAAAGCTTGGTGAATCCAGCAGGGTGGTTGGAATGGAGTGGTAATTTTGCATTGAACACATTGTATTATGGAGAGTTTAAGAATTATGGGCCTGGTTCATCAACTGCTAATAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCGAATGAAGCAGCTAAATTTACAGTTGGGAATTTCATTGCTGGGAATTCATGGTTGCCCGGAACTGGAGTCCCATTCACTGCTGGGCTTTGA 1560 46.92 MAQKLHFSILLFSLFILSSTSLPFSTKTNKKAIDLWCSRTPYPDVCKNFFNDGQFDPKNLLDIQKTALKIAMERAIRTETLTKALGQKCRNKKERAAWADCLELYQTTILHLNKTFSDHCSNFDIQTWLSSALTNLDTCRAGFVDLGIKDYGVVFPFLANNNITKLISNSLAMNNCSESDEGNTSDEGFPKWVRGGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAGKRKGSGRFVIRIKKGVYKENVVIKVKNLMLVGDGLRYTIITGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPQNHQAVALRSGADLSVFFRCGFEGYQDTLYAHSQRQFYRECYIYGTIDFIFGNAAVVLQNCMIYARKPMQGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVIKSVRTYLGRPWKEYSRTVYLQSFMESLVNPAGWLEWSGNFALNTLYYGEFKNYGPGSSTANRVKWKGYRVITSANEAAKFTVGNFIAGNSWLPGTGVPFTAGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20495373 20497329 + MELO3C005459.2.1 Cme09g01544 338404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01544 519 SMART PMEI_2 28 173 IPR006501 GO:0004857
Cme09g01544 519 CDD PMEI-like_3 35 175 - -
Cme09g01544 519 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Cme09g01544 519 Gene3D - 203 519 IPR012334 -
Cme09g01544 519 PANTHER PECTINESTERASE 9 518 - -
Cme09g01544 519 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857
Cme09g01544 519 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Cme09g01544 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Cme09g01544 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 176 IPR035513 -
Cme09g01544 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857
Cme09g01544 519 Pfam Pectinesterase 209 505 IPR000070 GO:0030599|GO:0042545
Cme09g01544 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 176 IPR035513 -
Cme09g01544 519 PANTHER PECTINESTERASE 9 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00280 Cme-Chr6:1704765 Cme09g01544 Cme-Chr9:20495373 0 dispersed
Cme06g00898 Cme-Chr6:6304129 Cme09g01544 Cme-Chr9:20495373 0 dispersed
Cme06g02012 Cme-Chr6:24927549 Cme09g01544 Cme-Chr9:20495373 0 dispersed
Cme08g00385 Cme-Chr8:2391384 Cme09g01544 Cme-Chr9:20495373 6.42E-151 dispersed
Cme09g01544 Cme-Chr9:20495373 Cme09g01983 Cme-Chr9:23683621 4.28E-153 dispersed
Cme09g01544 Cme-Chr9:20495373 Cme09g01369 Cme-Chr9:18920596 5.81E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01544 K01051 - csv:101216005 983.4