Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01554 ATGCAAAATGCACCGCTTTTACTTAAGTTCCCCATTCTGCCCTCCCTCTTCCCGTTCTCTTCTCTTTCACTTCCTTCTCCCACTCCTCCTTCCATTCCATTTCTTACCTCAGTAGTCCATAGCTCTGTTCTTCGAAAACGATTTTGTTTTAAGGCAATGCCTTCTGCTGGCGGTGGCGACGACCTCGTTAATGGTGGTGCTTTCTCCGGCTTCAGTCTCACTGAATCCTCCTTCTTGGCCTCTTTAATGCCTAAGAAAGAAATTGCTGCTGATCGCTTCATTGAGGCTAATCCTGAGTTCGATGGCCGTGGTGTTCTTATTGCGATTTTTGATAGTGGTGTTGACCCTGCTGCTGCGGGATTACAAGTGACATCAGATGGAAAGCCTAAGATATTGGATATTCTTGATTGTACGGGGAGTGGCGATGTTGATACCTCGAAGGTGGTGAAGGCTGATGAAGATGGTTGCATTATTGGAGCTTCAGGGGCTTCTTTGGTTATCAATTCTTCGTGGAAGAACCCTTCTGGTGAGTGGCATGTGGGGTGTAAATTTGTTTATGAGTTATTTACAGACACGTTGACTTCTCGTTTGAAGAAAGAGAGAAAGAAGGATTGGGATGAAAAGAATCAGGAGGAGATTGCCAAGGCTGTTAAGGTTCTTGATGAGTTTGATCAGGTTAAACACACCAAGGTGGAGGACCCAAATCTGAAAAGAATTCGTGAGGACCTCCAATACCGAATTGATATTCTTAAAAAACAAGCTGATTGCTATGATGACAAGGGGCCAGTCATTGATGCTGTTGTTTGGCACGATGGAGAAGTATGGAGGGTTGCTCTTGATACACAAAGCCTTGAGGACGAGCCTACCTCTGGAAAGCTTGCCAATTTTGTGCCACTAACAAATTATAAGATTGAAAGGAAGTTTGGCGTGTTTAGCAAGTTGGATGCTTGTACATTTGTCGTTAATGTGTACGATGAGGGAAATATCTTAAGTATAGTTACAGATTGCTCTCCTCATGGTACTCATGTTGCTGGTATTGCTACTGCTTTCCATCCAAAGGAACCCTTGTTGAATGGAGTTGCTCCTGGTGCACAACTGATATCTTGTAAGATTGGAGACACACGTTTAGGGTCAATGGAGACTGGAACAGGGCTGACTCGAGCATTGATAGCGGCTGTGGAGCACAAATGTGATCTCATAAATATGAGTTATGGTGAGCCAACATTACTTCCAGACTACGGTCGCTTTGTTGACCTTGTTAATGAGGCGGTAAACAAGTACCGGTTAATATTTGTGAGCAGTGCTGGTAATAGTGGGCCAGCTTTGAATACTGTTGGTGCTCCTGGTGGTACAAGTTCAAGTATTATAGGAGTTGGTGCCTATGTCTCTCCGTCGATGGCTGCTGGTGCTCATTGTGTGGTTGAAGCTCCAAGTGAAGGGCTTGAATATACTTGGTCAAGTCGTGGACCAACGGCAGATGGAGATCTTGGTGTTTGTATAAGTGCTCCTGGTGCTGCTGTTGCTCCTGTTCCTACATGGACCCTACAAAGACGAATGCTTATGAATGGGACCTCTATGGCATCTCCATCTGCCTGTGGGGGCATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTACTGTGAGCCCATATCTTGTGAGGAAGGCTCTCGAGAATACAACCATTCCGGTGGGTTGCTTACCAGAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATATGAATATATTCGGAAGTCCCAGAATGTTCCTTATGTTTGGTATAAAGTGAAGATTAATCAATCTGGAAAATTATCTCCTACAACACGAGGAATTTACTTGAGAGAGGCTAGTGCCTGCCGTCAACTTTCTGAGTGGACAGTACAAATTGAACCCCAGTTTCATGAAGATGCGAATAACTTAGAAGAGCTGGTCCCTTTTGAGGAGTGTATCGCATTGCATTCCAGTGAAAAAACAGTTGTCACTGTTCCTGATTATTTGCTTCTCACACATAATGGACGCAGCTTCAACGTAGTGGTTGACCCTTCCAATCTTAGTGATGGCCTGCACTATTATGAACTCTATGGCATTGATTGCAAGGCTCCATGGCGGGGTCCTCTATTCAGAATCCCAGTAACTATAACAAAACCAGTAGTTGTGGTGGATCGCCCTCCAATAGTTTCTTTTTCAAGAATGTCATTTTTACCAGGCCATATAGAGCGGAGGTTCATAGAGATACCACGTGGTTCTAGTTGGGTTGAAGCAACCATACAAACTACAGGATTTGACACGACAAGGAAATTTTTTATTGACACGGTTCAGATTTTGCCCTTGAAAAGGCCTTTGAAGTGGGAGAGTGTGGTAACATTCTCGTCTCCTGCTTCCAAAAGTTTTTGTTTTCCTGTTGTGGGTGGCCAAACTATGGAACTGGCAATTGCTCAATTTTGGTCAAGTGGCATCGGAAGCAGGGAGTCATCGCTTGTAGATTTTGAGTTAACATTTCATGGGGTTAGTACCAATAAAGATGAAATAGTGTTTGATGGAAGTGAAGCGCCTGTTAGAATTGATGCTGAAGCTTTGTTGGCATCAGAAAAACTTACTCCTGCTGCCATCCTGGACAAGATAAAAGTTCCATATCGGCCATGTGAAGCCAAACTTTGCACACTTCCTACGGATCGTGACAGATTGCCTTGTGGGAAACAGATTTTATCACTGACACTGACCTACAAGTTCAAATTAGAAGATGGTGCTGAAGTGAAACCTACTATTCCATTGTTTAATGACCGTATCTATGACAATAAATTTGAGTCTCAATTCTATATGATCTCTGACACGAATAAGCGTATTTATGCTATGGGTGATGCATATCCAAAGTTTAAAAAACTTCCCAAGGGAGAATATAATTTACAGCTACATATAAGGCACGAGGATGTCCAATGTTTGGAAAAAATGAAGCAGTTGGTGGTGTTTATAGAAAGAAAATTGGAGGATAAGGATACTATTAAATTGAACTTTTTCTCTCAACCCGATGGTCCTATGATAGGGAATTCTGCTTACAAATCCTCAGTTTTCTTTGGTAGGAAAAAGGAAGCCTTCTATATAGGCCCACCACCAAAAGATAAGTTCCCTAAGAATTCTCCTCAAGGATCGGTTCTATTGGGAGCAATCTCGTATGCAAAACTAGGCATTGTTAGTTCAAGTAAGGAAAGTTCACGGAAGATGCCTGCATATTATCAAATCTCCTTCGTAGTGCCACCAACTAAGCCTGAAGAAGACAAGGGTAAAGGTTCTTCTCCAGCCTTGACGAAGACAATTTCTGAGCGTCTAATAGAAGAGGTTCGTGATGTAAAGATCAAATTTCTTTCAAGCCTAAAACCAGAAAGTGATGAAGAGTTTTCAGAATGGAAGAAGTTGTGCTCATCCCTTAAGAGCGAATATCCAAACTACACTCCACTGCTTTCAAAAGTATTGGAAGGTTTGATTTCTCAAAGAAATATTGAGGACAGAAGCTGCCATGATGAAGAGGTCATTGATGCTGCAAACGAGGTAGTTGATAGCATAGACAGAGATGAGCTGGCCAGGTATTTTGCACTGAAAAATGATCCCGAAGATGAAGACGTGGAGAAAATCAAGAAGAAGATGGAGGCTACCCGCGATCAATTGGCAGAGGCACTATACCAAAAAGGGCTAGTCTTGGCAGAAATTGAGTCTTTAAAGAGCAAGGTTGAGAGTACTTCGACACTTGTTCGAGAAGATGCAAAAGATGTTGGGAAGTCTGAGGATTCTTTCGAAGAGAATTTCAAAGAACTAAGGAAATGGGTAGATGTCAAGTCTTCTAAGTTTGGAACTCTTGCGGTGTTGCGCGAGAAGCGCTGTGGGAGGCTAGGTACAGCTCTGAAGGGATGTTTGGTTATAAATACAGTGAGTAGGGAAGAAGCCAACAATATTTTGCGGCTGGGGTTCACTAAGGTAGTCAATGATGTTATTGAAAATGGTGGAGAACCTCCCAAGAAGAAACTCTATGAACTGAAGTTGTCTTTGCTTGAAGAGATTGGTTGGTCTCATTTGGTATCATATGAAAAGCAATGGATGCATGTACGTTTTCCTTCAGGCCTTCCTCTATTTTAA 4143 42.67 MQNAPLLLKFPILPSLFPFSSLSLPSPTPPSIPFLTSVVHSSVLRKRFCFKAMPSAGGGDDLVNGGAFSGFSLTESSFLASLMPKKEIAADRFIEANPEFDGRGVLIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDVDTSKVVKADEDGCIIGASGASLVINSSWKNPSGEWHVGCKFVYELFTDTLTSRLKKERKKDWDEKNQEEIAKAVKVLDEFDQVKHTKVEDPNLKRIREDLQYRIDILKKQADCYDDKGPVIDAVVWHDGEVWRVALDTQSLEDEPTSGKLANFVPLTNYKIERKFGVFSKLDACTFVVNVYDEGNILSIVTDCSPHGTHVAGIATAFHPKEPLLNGVAPGAQLISCKIGDTRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFVDLVNEAVNKYRLIFVSSAGNSGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHCVVEAPSEGLEYTWSSRGPTADGDLGVCISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENITVSPYLVRKALENTTIPVGCLPEDKLSTGQGLMQVDKAYEYIRKSQNVPYVWYKVKINQSGKLSPTTRGIYLREASACRQLSEWTVQIEPQFHEDANNLEELVPFEECIALHSSEKTVVTVPDYLLLTHNGRSFNVVVDPSNLSDGLHYYELYGIDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFSRMSFLPGHIERRFIEIPRGSSWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFELTFHGVSTNKDEIVFDGSEAPVRIDAEALLASEKLTPAAILDKIKVPYRPCEAKLCTLPTDRDRLPCGKQILSLTLTYKFKLEDGAEVKPTIPLFNDRIYDNKFESQFYMISDTNKRIYAMGDAYPKFKKLPKGEYNLQLHIRHEDVQCLEKMKQLVVFIERKLEDKDTIKLNFFSQPDGPMIGNSAYKSSVFFGRKKEAFYIGPPPKDKFPKNSPQGSVLLGAISYAKLGIVSSSKESSRKMPAYYQISFVVPPTKPEEDKGKGSSPALTKTISERLIEEVRDVKIKFLSSLKPESDEEFSEWKKLCSSLKSEYPNYTPLLSKVLEGLISQRNIEDRSCHDEEVIDAANEVVDSIDRDELARYFALKNDPEDEDVEKIKKKMEATRDQLAEALYQKGLVLAEIESLKSKVESTSTLVREDAKDVGKSEDSFEENFKELRKWVDVKSSKFGTLAVLREKRCGRLGTALKGCLVINTVSREEANNILRLGFTKVVNDVIENGGEPPKKKLYELKLSLLEEIGWSHLVSYEKQWMHVRFPSGLPLF 1380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20542157 20560577 - MELO3C005470.2.1 Cme09g01554 338414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01554 1380 Gene3D - 1108 1380 - -
Cme09g01554 1380 PRINTS Subtilisin serine protease family (S8) signature 522 538 IPR015500 -
Cme09g01554 1380 PRINTS Subtilisin serine protease family (S8) signature 335 348 IPR015500 -
Cme09g01554 1380 PRINTS Subtilisin serine protease family (S8) signature 102 121 IPR015500 -
Cme09g01554 1380 Coils Coil 1212 1232 - -
Cme09g01554 1380 Gene3D - 146 217 - -
Cme09g01554 1380 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 82 565 IPR034051 GO:0006508|GO:0008240
Cme09g01554 1380 Pfam Tripeptidyl peptidase II 866 1050 IPR022229 -
Cme09g01554 1380 PANTHER TRIPEPTIDYL PEPTIDASE II 64 1260 - -
Cme09g01554 1380 Pfam Subtilase family 102 562 IPR000209 GO:0006508|GO:0008236
Cme09g01554 1380 PANTHER PEPTIDASE S8 64 1260 - -
Cme09g01554 1380 ProSitePatterns Serine proteases, subtilase family, histidine active site. 339 349 IPR022398 -
Cme09g01554 1380 Gene3D - 599 731 - -
Cme09g01554 1380 Gene3D Peptidase S8/S53 domain 263 596 IPR036852 GO:0004252|GO:0006508
Cme09g01554 1380 ProSitePatterns Serine proteases, subtilase family, serine active site. 523 533 IPR023828 -
Cme09g01554 1380 ProSiteProfiles Serine proteases, subtilase domain profile. 76 586 - -
Cme09g01554 1380 SUPERFAMILY Subtilisin-like 86 598 IPR036852 GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01554 K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10] - csv:101220162 2554.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01554 Cme-Chr9:20542157 Cme10g01624 Cme-Chr10:21617506 1.80E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36