Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01562 ATGGATTCATCTTCAAGAGCTCTCAAGGGTTTCAAAGAGGGGCGAAAAGTGAGAGTGATCGCCAAGATCAAGAGCTTGCCTGGTCAGGAAATAGATGGAGGATCTACGGCATCTTGGATCTCTGTGAACAAGCCTGATGGGGATGCTTCCGAATCTGTAACCATTTCCTTTGGGGACCAGCCTGTGAGTCGTAAGGAGACTTATGAAGTAGACTACTGTTACGAGCAAAACGAAGACACTGAAAACATATTTACAAGAGAGGTGAAATCTCTGATTCCTGGGATCTTTGACGGTCATCATGCAACAGTTATCGCATATGGTGCAAGAGGAACTGGGAAAACTTCTACAATTCAGGGTACTATTGAGAAACCGGGTTTGGCATCATTAACCATTAATGAATTACTTCTAATGGCCAAAGAGAAAGGGAAATCAGTTTCCATATCATACTATGAAGTTTACATGGACTATGTCTATGATTTACTGGATCCGAAACGAGCAACAGTTCTGGTATTGGATAATGGTCAAGGGAAAATACAACTTAAGGGACTTTCGCGGATTCCAGTGAAATCTCTGTCAGATTTCCATGGACTATATTTTGTTGGTTCTAGTTCACATAAACAAGGGCAAAAGAATACAAACGAACCTCCTCCTAGAAGCCACAGGGGCTTGATAGTGCATATTTCATCTACCAATGAGACTGCATCAGATACTCGTTTTGTTTCCAAGATGAATTTTGTTGACATGGCAGGTTATGAAGATGCTAGAAGGAGAAGTACTGATGGCACGAGCCTCGTCGAAAATAGTAAAATTAACAAGTCGATATATGCCTTGCTGAATGTTGCTTCTGCTTTGAATTCAAATGATAACCACGTGCCATATCGAGAAAGTAAGCTTACTCGCATTCTGCAAGATTCCTTGGGAGGAGCGCAAAGCAGGATTTTGATGATTAGTTGCTTGAATTCATCATTTTGCCAAGACTCCATCTACATGGCGAACTTAGCAGCTAGATCTTGTCAAGTAACTAAGCGCGTTGCTTCAAGTGCCATTAGGAAAATGAAGAGTTCGACAAATTCTGTGGTGCATTCGTCACTTAAAAACCAAATACCTAAGAGTGTTTCTGCAACTGCAAAGAAGCAGACTATCTCCCGATTTTCTTTTTCTGAAAAGAAGGCTAGTGTTAGTACAACCTCCTCTGCAATGAAAGGAAGGAAGTTGTTCGATGATGCAACAAGTTATTTGGGAAAACTGGACAAGGAAACTAAATTGTCAAGTGCATCTTCTAGACGTGAACGTTTGAAGAATGGAGGACCTATTTCTGTTGTAGACCAGGAATTATCTGTTGCAGAAATTTCCAATTCGGTAGAAACTATCATTATGCCAGAGGGTGTTTCTAATAGCAATCAAGAACCTGAAAGAATCGATAACGACATGAATGTATTATCTGCCAATGGAGGTGGTCAAAATATCAACGAGGAAAAAAATTACTCAATGATCAATATTGACGACATTCCTGCGGAAAGCACACCTGAGGTGACGAGTAGCACCAGTTTGTTTGCTGTTCAAAGTTCATGTTTGGATAAGGAAAACAGTAGCTATATGATCAATGAAGAATCATCTCCTCCAATCAGTGCACGATTACAAGCTTTATCAAACAGCTTGAGGTTACTCTGTTCTTCGACGCCAACGTGTAAGATCCCTGTTAGTGATGATCCATGTGGCTTAGTCTCTACTGATGCTGTTACGGAACAACAAACTCCGAAAATGGAACGAAGTTTGCAAGTTTATGATGAAGAGGCCGACGCAAATCCAACTACTCCGTGGGAAAGACTAAGCAAGCGCAGTACGGGTTTGCAGAAACTACTTGTGGAGGATCTTCTAAGGTTTATTAACACAGCTAGCAAGGAAGAATTGAAACAATTGAATGGTATTGGAGAGAAGAGAGCAACAGCAATTATTGAACTTCGTGAAGAATCGCCCGAGCCTTTTAAGAGTCTTGATGATCTGATGGAGATCGGACTATCAGCAAAACAGATAAAAGGATTGATGAAAAAAGAAGCTGGTGAGCTATTATTCAAGTAG 2079 40.79 MDSSSRALKGFKEGRKVRVIAKIKSLPGQEIDGGSTASWISVNKPDGDASESVTISFGDQPVSRKETYEVDYCYEQNEDTENIFTREVKSLIPGIFDGHHATVIAYGARGTGKTSTIQGTIEKPGLASLTINELLLMAKEKGKSVSISYYEVYMDYVYDLLDPKRATVLVLDNGQGKIQLKGLSRIPVKSLSDFHGLYFVGSSSHKQGQKNTNEPPPRSHRGLIVHISSTNETASDTRFVSKMNFVDMAGYEDARRRSTDGTSLVENSKINKSIYALLNVASALNSNDNHVPYRESKLTRILQDSLGGAQSRILMISCLNSSFCQDSIYMANLAARSCQVTKRVASSAIRKMKSSTNSVVHSSLKNQIPKSVSATAKKQTISRFSFSEKKASVSTTSSAMKGRKLFDDATSYLGKLDKETKLSSASSRRERLKNGGPISVVDQELSVAEISNSVETIIMPEGVSNSNQEPERIDNDMNVLSANGGGQNINEEKNYSMINIDDIPAESTPEVTSSTSLFAVQSSCLDKENSSYMINEESSPPISARLQALSNSLRLLCSSTPTCKIPVSDDPCGLVSTDAVTEQQTPKMERSLQVYDEEADANPTTPWERLSKRSTGLQKLLVEDLLRFINTASKEELKQLNGIGEKRATAIIELREESPEPFKSLDDLMEIGLSAKQIKGLMKKEAGELLFK 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20594822 20600346 - MELO3C005479.2.1 Cme09g01562 338422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01562 692 Gene3D - 617 688 - -
Cme09g01562 692 ProSiteProfiles Kinesin motor domain profile. 16 340 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01562 692 Pfam Kinesin motor domain 58 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01562 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 351 IPR027417 -
Cme09g01562 692 PANTHER KINESIN-RELATED 16 682 IPR027640 GO:0003777|GO:0007018
Cme09g01562 692 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01562 692 PRINTS Kinesin heavy chain signature 210 227 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01562 692 PRINTS Kinesin heavy chain signature 98 119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01562 692 PRINTS Kinesin heavy chain signature 291 312 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01562 692 PANTHER KINESIN-LIKE PROTEIN KIN-10C 16 682 - -
Cme09g01562 692 SUPERFAMILY RuvA domain 2-like 621 683 IPR010994 -
Cme09g01562 692 Gene3D Kinesin motor domain 4 340 IPR036961 -
Cme09g01562 692 Pfam Helix-hairpin-helix motif 629 677 - -
Cme09g01562 692 SMART kinesin_4 14 348 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01562 K10403 KIF22; kinesin family member 22 - csv:101218738 1259.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02619 Cme-Chr4:32076722 Cme09g01562 Cme-Chr9:20594822 2.44E-12 dispersed
Cme09g01562 Cme-Chr9:20594822 Cme02g01775 Cme-Chr2:24628738 2.66E-33 dispersed
Cme09g01562 Cme-Chr9:20594822 Cme04g00238 Cme-Chr4:1868965 2.00E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34