Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01564 ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAGTAAAGAAAAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTACTGATGGTAAAACGAACAGCAAATCAGGAGAGTCTCCGAGAAATTGTAATGACACAATTTCTGAGCAGGGATCTCGATCTCCTATTTTTTCAAGATCAGCTTCCCCTTCCAAACAAGTTTTAAGATGTCAAAGCTTTTCCGAGAGGCCACAAGCACAACCTCTTCCACTTCCTGGTGTCCAGCCGCCAATTGTAGGTCGGACAGACTCTGGGATTAGGATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCAAGACCAGCATGCATTCGTGGGCAGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAACTGATAGCACGGATCTATCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCCGCAAGCAGTCCTTCCAGTGTCATTCTCAAGGATCAGTCTTCTACTCTCACCCAACCAAGTTCGCAAAAGGCCAGAAAACCGGCTAATATCTCATTGAGCAACCACATTTTCTCAACATCACCCAAGCGGAGACCTTTAAGCAGTCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATGTATGCATTGCACCTGATAGTTCAATGTCAAGTCCTTCTAGGAGTCCCATAAGGGCATTTAGCTCCGAGCAAGTTATTAATAATGCTGTCAGTACTGGAAAGTTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTGCAACAAAGCCGGGGTAGCCCTGAATATTCTCCAGTACCTAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGGGCGGGAGGTATACCAACTGAGTCACAGACAAGCTGGCCTGATGAGAAGCAAACTCACCGCCTGCCCCTACCTCCCGTTGCAATTTCCAATGCTCCTTTTTCTCATTCCAATTCAGCTGCAACTTCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCGGCAAGCCCGGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTACTTTTGGACATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAAGTTACATTATTTTCTGACGATGCGAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACGACATCCAAATATTGTGCAGTATTATGGATCTGAAACGGTTGGGGACAGGTTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGATTCAGCACTTCGTAGTTATACTCAGCAAATATTGTCTGGGCTTGCATATTTACACGCTAAAAGCACAGTTCACAGGGATATCAAAGGAGCAAATATACTTGTTGATCCCACTGGGCGTGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACTGGCCAATCGTGCCCTTTGTCATTTAAAGGAAGCCCGTATTGGATGGCACCTGAGGTTATCAAAAACTCAAATGGTTGCAACCTTGCGGTAGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGTCAATATGAGGGAGTTGCTGCGATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCAGATCACCTTTCACATGATGGAAAAGATTTCGTTAGACAATGTCTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTGAAACATGCTGCACCTCTTGAAAGACCGATTTTAGGTTCTGAACATTCAGATCCAACTCCAGGAATTACAAATGGAGTAAGAACATTGGGTATTGAACAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCCCAACAGCTGCTTTCCATTCCAGTGAAATTCATATTCCAAGGAACCTATCGTGCCCTGTTTCGCCCATCGGAAGCCCTCTGGTGCACTCACGATCGCCTCAACATCCTAGTGGAAGAATGTCTCCGTCACCCATATCTAGCCCTCGTAACATGTCGGGTGCATCTACTCCTCTCACAGGAGGAAGTGGTGCCATTCCACATCAGCATCTCAAGCAATCACTGTACCTTCAGGAGGGATTTGGGAACTTGCCAAAACCTTCGATGGCTCCTTATAGCAATGGTCCTTCCTTTCACGATATAAACCCTGACATCTTTCAGGGGATTCAGCCAGGCTCACACATCTTTTCTGAGCTTGTACACCATGAAACCGATTTTCTGGGCAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGATGGGCAGGCGGTCTTGGCTGATCGTGTTTCCAGGCAGCTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAGTCCAAGCTCTCTTTTGACCAACCGCAAATAG 2670 45.84 MPSWWGKSSSKEVKKSKESLIDTLQRKLRTTDGKTNSKSGESPRNCNDTISEQGSRSPIFSRSASPSKQVLRCQSFSERPQAQPLPLPGVQPPIVGRTDSGIRISPKPRSERGSKPSSFLPLPRPACIRGQPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAASSPSSVILKDQSSTLTQPSSQKARKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNVCIAPDSSMSSPSRSPIRAFSSEQVINNAVSTGKFYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPVPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVAISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLRHPNIVQYYGSETVGDRFYIYLEYVSGGSIYKLLQEYGQLGDSALRSYTQQILSGLAYLHAKSTVHRDIKGANILVDPTGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKHAAPLERPILGSEHSDPTPGITNGVRTLGIEQGRNPSFLDSDRSAAHSSRLPTAAFHSSEIHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGNLPKPSMAPYSNGPSFHDINPDIFQGIQPGSHIFSELVHHETDFLGKQFGKPAWELYDGQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20609817 20616762 + MELO3C005481.2.1 Cme09g01564 338424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01564 889 MobiDBLite consensus disorder prediction 742 777 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 674 710 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 10 34 - -
Cme09g01564 889 SUPERFAMILY Protein kinase-like (PK-like) 405 748 IPR011009 -
Cme09g01564 889 CDD STKc_MEKK1_plant 406 663 - -
Cme09g01564 889 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01564 889 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Cme09g01564 889 MobiDBLite consensus disorder prediction 283 317 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 738 781 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 169 207 - -
Cme09g01564 889 SMART serkin_6 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01564 889 MobiDBLite consensus disorder prediction 35 81 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 283 410 - -
Cme09g01564 889 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01564 889 Gene3D Transferase(Phosphotransferase) domain 1 405 680 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 1 207 - -
Cme09g01564 889 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 811 - -
Cme09g01564 889 MobiDBLite consensus disorder prediction 375 393 - -
Cme09g01564 889 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 811 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02003 Cme-Chr3:27752940 Cme09g01564 Cme-Chr9:20609817 3.72E-111 dispersed
Cme06g01017 Cme-Chr6:7319721 Cme09g01564 Cme-Chr9:20609817 0 dispersed
Cme08g01088 Cme-Chr8:7195247 Cme09g01564 Cme-Chr9:20609817 5.95E-147 dispersed
Cme09g00825 Cme-Chr9:10617005 Cme09g01564 Cme-Chr9:20609817 9.40E-22 dispersed
Cme09g00855 Cme-Chr9:11355542 Cme09g01564 Cme-Chr9:20609817 1.60E-81 dispersed
Cme09g01564 Cme-Chr9:20609817 Cme11g00827 Cme-Chr11:10812050 9.68E-51 dispersed
Cme09g01564 Cme-Chr9:20609817 Cme08g00551 Cme-Chr8:3459611 2.35E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65168 PF00069 Pkinase 1.50E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01564 K20717 - csv:101222716 1717.98