Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01576 ATGCTCAAACTAATCCTTCCCCTTGCTTCCGCCACCCTTTTCCTTCTCCTCCTAATCACCATCTTCCTTCTTCGCCTTAAGCTCTCCAAAAATCACGACATCGAGAAATCCTCCACCACCCACAAGACCAACAACAACAACAAAACAGATCACACCCCCCTTCCGCCCCCGCCGGAGCTCACCACTTTTGAGGGCGGCCAAGATTTGACCATCGACGAGATTTTAGAGGCTCCCGGAGAAGTGATCGGAAAATCCCACTACGGAACTCTGTACAAGGCTGTGTTACAGACCACCCAAACCATCCGGCTACTTAGATTTCTCCGGCCGGCCGCTGCCGGAGGTGAGGACCAGCACGACCTCGTTCGGTTCCTGGGTTCGGTTCGGCATCGGAATTTGGTTCCGTTGCTAGGATTCTACGCCGGCGGGAGGGGTGAGAAGCTTTTGGTTCATCCGTTCTACGAACATGGGAATCTGGCGGAGTTCATTAGAGACGATGGGGAATCAAAAAATTGGGAAGTGATTTGCAAAATCGCCATCGGAATCGCCAGAGCCTTACATCATCTTCACAGCGGATTACAAAAACCAATCTCCCATGGAAATCTCAACTCCAAGAACGTTCTTCTCGATCAAAATCTCGACCCCCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACTCCGCCGCAACTCGAGAAATGCTCCAAGTTTCCGCCTCCTCTGGCTACAAGGCGCCAGAACTTATCAATATGACCCACGCTGATGAACGCACCGACGTCTACAGCTACGGAAAGATCTTGCTCGAGTTGCTCATCTCCGCCAAAGAGCCGACGATTCGTAATCCGGTTGCTACCGGTGATTCCGGTGTCTCTGGAGAGCAGATTCTCCGATGCCTTGTTCAGATCGGGGAGGATTGTTGTCGTTCTTCGCCGAATCTTCGACCGGATTTTAGGGAAGTGATTGCTAAGATTGAAGAAATCAGAAGAATTGAGAAGAATTAA 999 51.15 MLKLILPLASATLFLLLLITIFLLRLKLSKNHDIEKSSTTHKTNNNNKTDHTPLPPPPELTTFEGGQDLTIDEILEAPGEVIGKSHYGTLYKAVLQTTQTIRLLRFLRPAAAGGEDQHDLVRFLGSVRHRNLVPLLGFYAGGRGEKLLVHPFYEHGNLAEFIRDDGESKNWEVICKIAIGIARALHHLHSGLQKPISHGNLNSKNVLLDQNLDPHVSDFGLHLLLNSAATREMLQVSASSGYKAPELINMTHADERTDVYSYGKILLELLISAKEPTIRNPVATGDSGVSGEQILRCLVQIGEDCCRSSPNLRPDFREVIAKIEEIRRIEKN 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20678018 20680707 - MELO3C005492.2.1 Cme09g01576 338436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01576 332 SUPERFAMILY Protein kinase-like (PK-like) 79 325 IPR011009 -
Cme09g01576 332 MobiDBLite consensus disorder prediction 35 58 - -
Cme09g01576 332 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 281 - -
Cme09g01576 332 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 291 327 - -
Cme09g01576 332 ProSiteProfiles Protein kinase domain profile. 76 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01576 332 Pfam Protein tyrosine and serine/threonine kinase 80 322 IPR001245 GO:0004672|GO:0006468
Cme09g01576 332 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 281 - -
Cme09g01576 332 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 291 327 - -
Cme09g01576 332 Gene3D Transferase(Phosphotransferase) domain 1 70 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01815 Cme-Chr7:23606992 Cme09g01576 Cme-Chr9:20678018 9.20E-104 dispersed
Cme09g01576 Cme-Chr9:20678018 Cme01g01718 Cme-Chr1:23994347 1.52E-55 dispersed
Cme09g01576 Cme-Chr9:20678018 Cme02g01293 Cme-Chr2:18860631 1.37E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65170 PF07714 PK_Tyr_Ser-Thr 4.80E-28 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01576 - - csv:101217438 514.227