Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g01585 | ATGTACCAGACCACTAAAACAGAGTCCGATTTTGGTTTCCTTGACCCAATTCGCCGCCACTTATTAGGTGAATCGGAGATTTCCGCCGCCACCGCCGCCGTCGCTCCCCTCGGCAGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTTAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGTGATTTGCCTCTCAAGGTCGACGACTCCGAAGATATGATGCTCGCCGCCGTTCTTCGGGACGCTGTCGGTGCCGGATGGGTTCCATCGCTAGGAAGTTGCGATTTTGGGTTTCCGGAGGTGAAAACAGAGCCGGAGGTGATTCCGGTGAGTTTCCCCGCGGTGTTACCGAATGTGACGGTGAAGCCGACGGTGGTACCGGAGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGGCGAAAAATGGGGCTAGAGTTTGGCTTGGAACGTACGAGACGGCGGAGGATGCAGCGTTGGCTTATGATCGAGCGGCTTACCGAATGCGAGGATCAAGGGCTTTGCTTAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCAGTTCGGGTGACATCGAAGCGATCGTCGCCGGAGGTATCTTCGTCGCCGAAGCGAAGAAAGAAAGTTGGGTCCGCCGTGGACAGTGTAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGACAGCTGTTTGTTAGCCAATGCTAA | 759 | 55.07 | MYQTTKTESDFGFLDPIRRHLLGESEISAATAAVAPLGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFPEVKTEPEVIPVSFPAVLPNVTVKPTVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVDSVGVQVEQQVASFTHGGQLFVSQC | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 20724994 | 20725901 | - | MELO3C005502.2.1 | Cme09g01585 | 338445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g01585 | 252 | Pfam | AP2 domain | 133 | 183 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | ProSiteProfiles | AP2/ERF domain profile. | 133 | 191 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | CDD | AP2 | 132 | 191 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | Gene3D | AP2/ERF domain | 132 | 194 | IPR036955 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | PRINTS | Ethylene responsive element binding protein signature | 134 | 145 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | PRINTS | Ethylene responsive element binding protein signature | 157 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | SMART | rav1_2 | 133 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g01585 | 252 | PANTHER | BNAANNG21280D PROTEIN | 26 | 233 | - | - | |
Cme09g01585 | 252 | SUPERFAMILY | DNA-binding domain | 133 | 193 | IPR016177 | GO:0003677 | |
Cme09g01585 | 252 | PANTHER | DNA-BINDING DOMAIN | 26 | 233 | IPR044808 | GO:0003700|GO:0009873 | |
Cme09g01585 | 252 | MobiDBLite | consensus disorder prediction | 198 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00012 | Cme-Chr6:90312 | Cme09g01585 | Cme-Chr9:20724994 | 5.76E-31 | dispersed | |
Cme06g00501 | Cme-Chr6:3162994 | Cme09g01585 | Cme-Chr9:20724994 | 6.09E-27 | dispersed | |
Cme08g00254 | Cme-Chr8:1650699 | Cme09g01585 | Cme-Chr9:20724994 | 1.49E-31 | dispersed | |
Cme09g01550 | Cme-Chr9:20523806 | Cme09g01585 | Cme-Chr9:20724994 | 9.61E-31 | dispersed | |
Cme06g02544 | Cme-Chr6:32446548 | Cme09g01585 | Cme-Chr9:20724994 | 1.43E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41973 | PF00847 | AP2 | 9.30E-15 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g01585 | K09286 | - | csv:101221583 | 451.44 |