Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01585 ATGTACCAGACCACTAAAACAGAGTCCGATTTTGGTTTCCTTGACCCAATTCGCCGCCACTTATTAGGTGAATCGGAGATTTCCGCCGCCACCGCCGCCGTCGCTCCCCTCGGCAGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTTAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGTGATTTGCCTCTCAAGGTCGACGACTCCGAAGATATGATGCTCGCCGCCGTTCTTCGGGACGCTGTCGGTGCCGGATGGGTTCCATCGCTAGGAAGTTGCGATTTTGGGTTTCCGGAGGTGAAAACAGAGCCGGAGGTGATTCCGGTGAGTTTCCCCGCGGTGTTACCGAATGTGACGGTGAAGCCGACGGTGGTACCGGAGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGGCGAAAAATGGGGCTAGAGTTTGGCTTGGAACGTACGAGACGGCGGAGGATGCAGCGTTGGCTTATGATCGAGCGGCTTACCGAATGCGAGGATCAAGGGCTTTGCTTAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCAGTTCGGGTGACATCGAAGCGATCGTCGCCGGAGGTATCTTCGTCGCCGAAGCGAAGAAAGAAAGTTGGGTCCGCCGTGGACAGTGTAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGACAGCTGTTTGTTAGCCAATGCTAA 759 55.07 MYQTTKTESDFGFLDPIRRHLLGESEISAATAAVAPLGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFPEVKTEPEVIPVSFPAVLPNVTVKPTVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVDSVGVQVEQQVASFTHGGQLFVSQC 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20724994 20725901 - MELO3C005502.2.1 Cme09g01585 338445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01585 252 Pfam AP2 domain 133 183 IPR001471 GO:0003700|GO:0006355
Cme09g01585 252 ProSiteProfiles AP2/ERF domain profile. 133 191 IPR001471 GO:0003700|GO:0006355
Cme09g01585 252 CDD AP2 132 191 IPR001471 GO:0003700|GO:0006355
Cme09g01585 252 Gene3D AP2/ERF domain 132 194 IPR036955 GO:0003700|GO:0006355
Cme09g01585 252 PRINTS Ethylene responsive element binding protein signature 134 145 IPR001471 GO:0003700|GO:0006355
Cme09g01585 252 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Cme09g01585 252 SMART rav1_2 133 197 IPR001471 GO:0003700|GO:0006355
Cme09g01585 252 PANTHER BNAANNG21280D PROTEIN 26 233 - -
Cme09g01585 252 SUPERFAMILY DNA-binding domain 133 193 IPR016177 GO:0003677
Cme09g01585 252 PANTHER DNA-BINDING DOMAIN 26 233 IPR044808 GO:0003700|GO:0009873
Cme09g01585 252 MobiDBLite consensus disorder prediction 198 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00012 Cme-Chr6:90312 Cme09g01585 Cme-Chr9:20724994 5.76E-31 dispersed
Cme06g00501 Cme-Chr6:3162994 Cme09g01585 Cme-Chr9:20724994 6.09E-27 dispersed
Cme08g00254 Cme-Chr8:1650699 Cme09g01585 Cme-Chr9:20724994 1.49E-31 dispersed
Cme09g01550 Cme-Chr9:20523806 Cme09g01585 Cme-Chr9:20724994 9.61E-31 dispersed
Cme06g02544 Cme-Chr6:32446548 Cme09g01585 Cme-Chr9:20724994 1.43E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41973 PF00847 AP2 9.30E-15 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01585 K09286 - csv:101221583 451.44