Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01609 GTAAAAAATGAAACCAAAACGACGTTGCTTTGGTATTATATAAACCCCATAACTAAGCTGCTCTCAGACCATCCCTCAGCTCCGGCGAGAATCTTCTACCTTCTTCTCTCTATTTACTCAACTCTTTCCTTCTTCGGTTTTCCCTCAACGAAAATGGTGAAGTTGGCTATAGGTTCCGCTGGCGATTCATTCAGTGCGGCTTCTCTTAAAGCCTATCTCTCTGAGTTCATCGCCACTCTCCTTTTCGTTTTCGCCGGTGTTGGCTCCGCCATTGCCTACGGTAAATTGACATCCGATGCAGCATTGGATCCACCCGGTTTGGTGGCAGTGGCGGTGGCTCATGCATTTGCATTGTTCGTGGGTGTGTCGATGGCGGCCAACATCTCCGGCGGCCACTTGAACCCAGCAGTGACCTTTGGGTTGGCCATCGGTGGCAACATCACCATCTTGACTGGCTTGTTCTATTGGATAGCCCAATTGCTTGGCTCCATTGTTGCTTGCCTCCTCCTTCAATTTGTTACCAACGGCAAGAGCATTCCGACCCACGGCGTGGCAGCAGGACTTGGAGCAATTGAAGGAGTGGTCTTCGAGATAATAATCACCTTCGGTTTGGTCTACACGGTTTACGCCACCGCCGCAGACCCCAAGAAGGGCTCTCTTGGAACCATTGCCCCAATCGCCATCGGCTTCATTGTGGGTGCCAACATTCTCGCTGCCGGCCCATTTAGCGGCGGCTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTAAGTGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGCGGTGGCCTTGCTGGGCTTATCTATGGCGATGTGTTCATTTCCTCTTATGCCCCTGTTCCTGTCTCCGGTGATTATGCTTAA 906 51.88 VKNETKTTLLWYYINPITKLLSDHPSAPARIFYLLLSIYSTLSFFGFPSTKMVKLAIGSAGDSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20879919 20882988 - MELO3C005526.2.1 Cme09g01609 338469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01609 301 PANTHER AQUAPORIN TIP2-2-RELATED 52 301 - -
Cme09g01609 301 PANTHER AQUAPORIN-8 52 301 IPR034294 -
Cme09g01609 301 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 PRINTS Major intrinsic protein family signature 229 251 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 PRINTS Major intrinsic protein family signature 70 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 PRINTS Major intrinsic protein family signature 266 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Cme09g01609 301 Gene3D Glycerol uptake facilitator protein. 53 294 IPR023271 -
Cme09g01609 301 TIGRFAM MIP: MIP family channel proteins 74 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 Pfam Major intrinsic protein 65 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 CDD MIP 70 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme09g01609 301 SUPERFAMILY Aquaporin-like 68 290 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02717 Cme-Chr1:34410056 Cme09g01609 Cme-Chr9:20879919 8.57E-117 dispersed
Cme03g01738 Cme-Chr3:25963205 Cme09g01609 Cme-Chr9:20879919 2.21E-79 dispersed
Cme09g01523 Cme-Chr9:20356405 Cme09g01609 Cme-Chr9:20879919 1.51E-62 dispersed
Cme09g01609 Cme-Chr9:20879919 Cme12g01777 Cme-Chr12:24357524 2.09E-76 dispersed
Cme09g01609 Cme-Chr9:20879919 Cme08g01268 Cme-Chr8:9177803 9.53E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01609 K09873 - csv:101203925 466.848