Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01623 ATGAATAAAACAGAAACTGTCAACCCCCAAAGAATATTGACCGTTGAAAAATCCCTGAGAAAGACTTACTTCTCTTGCACTTTCCTCATTCTCCATCTCCATCTTTCTCAGAACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCCTTTCTAACGCAATCCCCATTTAGAATCCGCCAACCTCTCTGCAACAAAAGACTTCACCGCCAATCACAATCCTCCAAACCCATTTTCACAATGCAGAAAAGTCCCTCAACCTCTTCCTTAGGTCCCGGCGGCCTCGACCTTTCTCAAGCCTTCTTCAAACCAATCCGCGACGCCTCTCCTCCATCCACCTCAAATCGCAACACCAAAATCTCCGTCATCGGCGCCGGAAACGTCGGTATGGCCATTGCTCAAACCATCCTCACTCAAGATCTGGTCGACGAACTCGTCCTCGTCGACGCCAAGCCCGACAAACTCCGTGGCGAAATGCTAGATCTCCAACACGCTGCTGCTTTTCTCCCTCGTACAAAAATCAGCGCCTCCACTGATTACTCCACTACTGCTGGATCTAATCTGTGTATTGTTACTGCTGGTGCTCGACAGATCGCAGGTGAATCTAGGTTGAATCTGTTGCAGAGGAATGTTGCTCTGTTTCAGAAGATTGTTCCGCCGTTGGTTCAGTTCTCTCCTGAGACGATTCTTTTGATTGTTTCGAATCCGGTGGATGTTTTGACTTATGTTGCTTGGAAACTCTCTGGTTTTCCGTCGAATCGTGTGATTGGATCGGGAACGAATCTGGATTCATCTAGGTTTCGGTTTCTTATTGCGGATCATCTCGACGTTAATGCTCAGGATGTTCAGGCATACATAGTTGGAGAGCACGGCGACAGCTCGGTGGCGCTATGGTCGAGCATAAGCGTGGGCGGGGTGCCAATACTAAGCTTTCTAAAGAATCAACAAATCGCCTACGAGAAAGAAACATTAGAGAAAATTCACAAAGAGGTCATAGGTGGGGCTTATGAAGTCATAAACCTCAAGGGCTACACATCATGGGCGATCGGGTACTCCGTTGCGAGTTTAGCTCGTTCCATCCTTCGGGACCAAAGGAGGATTCATCCTGTCTCTGTTCTCGCAAAAGGGTTTTACGGTATTGATGGTGGCGACTTGTTCCTTAGCCTGCCTGCACAGCTTGGGAGGGGTGGAGTATTGGGGATCACCAATGTGCATCTAACGGCAGAGGAGTCGAAACGGTTGAGGGACTCGGCAAACACCATCTTGCAGGTGCAAACCGAGTTAGGGATCTGA 1299 48.04 MNKTETVNPQRILTVEKSLRKTYFSCTFLILHLHLSQNFSSSSSSSSSSSSSFLTQSPFRIRQPLCNKRLHRQSQSSKPIFTMQKSPSTSSLGPGGLDLSQAFFKPIRDASPPSTSNRNTKISVIGAGNVGMAIAQTILTQDLVDELVLVDAKPDKLRGEMLDLQHAAAFLPRTKISASTDYSTTAGSNLCIVTAGARQIAGESRLNLLQRNVALFQKIVPPLVQFSPETILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLKNQQIAYEKETLEKIHKEVIGGAYEVINLKGYTSWAIGYSVASLARSILRDQRRIHPVSVLAKGFYGIDGGDLFLSLPAQLGRGGVLGITNVHLTAEESKRLRDSANTILQVQTELGI 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 20989032 20991991 + MELO3C005539.2.1 Cme09g01623 338483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01623 432 MobiDBLite consensus disorder prediction 72 93 - -
Cme09g01623 432 PANTHER L-LACTATE DEHYDROGENASE 83 432 - -
Cme09g01623 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 106 259 IPR036291 -
Cme09g01623 432 TIGRFAM L-LDH-NAD: L-lactate dehydrogenase 124 423 IPR011304 GO:0004459|GO:0005737
Cme09g01623 432 SUPERFAMILY LDH C-terminal domain-like 260 428 IPR015955 GO:0003824|GO:0016616
Cme09g01623 432 PRINTS L-lactate dehydrogenase signature 121 145 IPR001557 GO:0016616|GO:0019752
Cme09g01623 432 PRINTS L-lactate dehydrogenase signature 146 170 IPR001557 GO:0016616|GO:0019752
Cme09g01623 432 PRINTS L-lactate dehydrogenase signature 233 253 IPR001557 GO:0016616|GO:0019752
Cme09g01623 432 PRINTS L-lactate dehydrogenase signature 257 275 IPR001557 GO:0016616|GO:0019752
Cme09g01623 432 PRINTS L-lactate dehydrogenase signature 287 300 IPR001557 GO:0016616|GO:0019752
Cme09g01623 432 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 83 432 - -
Cme09g01623 432 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 262 424 IPR022383 GO:0016616
Cme09g01623 432 CDD LDH_1 117 429 - -
Cme09g01623 432 Pfam lactate/malate dehydrogenase, NAD binding domain 120 259 IPR001236 GO:0016491
Cme09g01623 432 ProSitePatterns L-lactate dehydrogenase active site. 289 295 IPR018177 GO:0004459
Cme09g01623 432 Gene3D - 262 430 IPR015955 GO:0003824|GO:0016616
Cme09g01623 432 Hamap L-lactate dehydrogenase [ldh]. 119 431 IPR011304 GO:0004459|GO:0005737
Cme09g01623 432 Gene3D - 104 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01623 K00016 LDH, ldh; L-lactate dehydrogenase [EC:1.1.1.27] - csv:101206249 681.019
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00687 Cme-Chr8:4549135 Cme09g01623 Cme-Chr9:20989032 7.54E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g521 . . . . . . . Bma14g00041 . . . Cma15g01128 . Car15g01033 . . . . . . . . . . . . . . . . . . . Cone6ag0679 Cone9ag0684 . Csa05g00415 Chy09g01095 . Blo03g00416 . Bda07g00006 . . Bpe11g00266 . . . . Cmo15g01187 . . . . . Cpe13g00228 Bhi12g00434 . . . . . Lcy12g1823 Cla01g00391 Cam01g0408 Cec01g0400 Cco01g0421 Clacu01g0409 Cmu01g0390 Cre09g2120 Lsi09g00417 . . Cme09g01623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004596 1 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 4 2 1 1 3 1 1 1 1 1 1 2 2 42