Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01640 ATGTCAGCTTACAGAGACGAAGATCCTCGCATCCATGGCATCAGGACTAAGATTCGTGTTGTCCCTGATTTCCCTCAACCAGGTATCATGTTCCAAGACATAACCACTCTGTTACTCGACCCCAAAGCTTTCAAAGATACTATTGATTTGTTCGTCGAGCGATACAAAGGGAAAAACATTTCGATTAATGTATTCTATAACTTTGATGAGGATGATCTAAAGCTGGGTAGAAACTTGTCGCTTTTGATTAGCCTGAAGATGGCGGGGTCCATTCTTTCGAGAATTGAAGCTCGAGGTTTTATATTTGGCCCTCCAATTGCATTGGCTATAGGAGCAAAATTTATCCCTTTAAGGAAACCAAGGAAGCTACCTGAATATGGAAGTGATTGCCTTGAGATGCATGTTGGAGCTGTCAAACCACATGAACGGGCCTTGGTGGTGGACGACTTGATTGCGACTGGTGGCACTCTCTGTGCAGCTATGAATTTACTTGTGACAGAGATCGAACCTTCAAACTTTTGGGATGAACGTGCTGGAGCTGAAGTAATTGAATGTGCTTGCGTCATTGAATTGCCAGTTTTAAAGGGTCGGGAGCGATTGAACGATAAGCCATTGTTTGTCCTAGTGGAGTACCAATAA 639 43.35 MSAYRDEDPRIHGIRTKIRVVPDFPQPGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISINVFYNFDEDDLKLGRNLSLLISLKMAGSILSRIEARGFIFGPPIALAIGAKFIPLRKPRKLPEYGSDCLEMHVGAVKPHERALVVDDLIATGGTLCAAMNLLVTEIEPSNFWDERAGAEVIECACVIELPVLKGRERLNDKPLFVLVEYQ 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21135754 21141718 - MELO3C005556.2.1 Cme09g01640 338500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01640 212 Pfam Phosphoribosyl transferase domain 98 203 IPR000836 -
Cme09g01640 212 Coils Coil 208 212 - -
Cme09g01640 212 Hamap Adenine phosphoribosyltransferase [apt]. 14 211 IPR005764 GO:0003999|GO:0005737|GO:0006168
Cme09g01640 212 CDD PRTases_typeI 95 210 IPR000836 -
Cme09g01640 212 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 2 62 - -
Cme09g01640 212 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 90 211 - -
Cme09g01640 212 Gene3D - 2 212 IPR029057 -
Cme09g01640 212 SUPERFAMILY PRTase-like 13 205 IPR029057 -
Cme09g01640 212 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 2 62 - -
Cme09g01640 212 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 90 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01640 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101216186 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02097 Cme-Chr3:28277635 Cme09g01640 Cme-Chr9:21135754 1.06E-79 dispersed
Cme06g02603 Cme-Chr6:33293224 Cme09g01640 Cme-Chr9:21135754 5.26E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme11g00452 . 110 594 PRT Gene Family AT2G16570 85.0 5.3e-241 830.5
Cme11g00452 . 109 594 PRT Gene Family AT4G34740 85.4 1.1e-241 832.8
Cme11g00452 . 114 567 PRT Gene Family AT4G38880 75.4 3.4e-197 684.9
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme06g02603 . 6 99 PRT Gene Family AT4G22570 88.3 1.7e-44 175.3
Cme03g02097 . 83 175 PRT Gene Family AT4G22570 80.6 1.7e-39 158.7
Cme03g01606 . 11 100 PRT Gene Family AT4G22570 77.8 4.5e-37 150.6
Cme09g01640 . 6 124 PRT Gene Family AT4G22570 63.9 4.5e-37 150.6
Cme06g02603 . 7 98 PRT Gene Family AT4G12440 88.0 2.1e-41 164.9
Cme03g02097 . 79 174 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g01066 . 20 205 PRT Gene Family AT1G71750 62.9 4.6e-67 251.1
Cme01g01088 . 16 468 PRT Gene Family AT1G55810 85.7 1.9e-225 778.5
Cme06g01664 . 19 482 PRT Gene Family AT1G55810 73.5 1.0e-199 693.0
Cme01g01088 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Cme06g01664 . 80 482 PRT Gene Family AT3G27440 75.2 2.5e-179 625.2
Cme06g01664 . 1 482 PRT Gene Family AT3G27190 86.1 2.5e-247 851.3
Cme01g01088 . 3 467 PRT Gene Family AT3G27190 74.1 2.5e-207 718.4
Cme08g02442 . 7 229 PRT Gene Family AT3G53900 77.6 2.7e-103 372.1
Cme01g01088 . 1 468 PRT Gene Family AT4G26510 83.8 2.2e-232 801.6
Cme06g01664 . 11 482 PRT Gene Family AT4G26510 75.2 3.4e-209 724.5
Cme06g01664 . 1 482 PRT Gene Family AT5G40870 86.3 2.7e-246 847.8
Cme01g01088 . 44 470 PRT Gene Family AT5G40870 80.1 5.6e-207 717.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139