Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01645 ATGTCATTCTCTTTGCAATCTCCGCCATCTGCGACCATTCCCCCGTCGCTGTCGCCGTCGCCCTCCTCCTCTTCCTTCCTTCAGAGAAAATTGGGGTTCTCAGCTGGATTATTCACACCCTCCATTCTAATTTCCCATTCCCCTACATCTCTTCCTTTAACTTCTGCTTCCTCCGGCTTCTCCTCTTCCCTCGACACTGGGTTGACATCTGAGTTAGACGCTGTTTCTAGCTTCAGTCAGATCGTTCCTGACACCGTCGTTTTTGACGATTTCGAGAGGTTTCCTCCTACTGCTGCTACTGTTAGCTCTTCTCTCCTTCTGGGCATATGTGGCCTTCCTGATACCATATTTAGAAATGCGGTTGATATGGCGTTGGCCGATTCTCAATGTTTTGGGCTAGACAACCCCGAATTGAAATATTCCTGTATTTTTAACAAGGCTCTAGTAAATGTTGGTGGTGATTTGGCAAAACTAGTTCCTGGACGTGTTTCAACTGAGGTGGATGCGCGTGTTGCGTATGATACGCATGGCATTATCAGAAAGGTGCATGACCTGCTGAAATTGTACAATGAAATCAATGTTCCTCCTGAGCGGTTGTTGTTCAAAATTCCGGCAACTTGGCAGGGTATTGAGGCCTCAAGATTGTTGGAATCAGAGGGAATACAGACACATTTGACTTTTGTATATAGCTTTGCCCAAGCAGCAGCTGCAGCTCAAGCTGGTGCCTCTGTCATTCAGATTTTTGTTGGTCGTCTACGTGATTGGGCTCGGAATCACTCTGGTGACCCTGAAATAGAAGCTGCACTTAAAAGAGGAGAGGATCCTGGGCTGGCTTTGGTGACAAAGGCTTACAACTACATTCACAAATATGGATACAGATCAAAGTTGATGGCAGCAGCAGTTAGAAATAAGCAAGATTTATTCAGTCTTCTGGGCGTGGATTACATCATTGCTCCATTGAAGGTATTGCAGTCCCTTAAAGAATCAGTTACCACTCCGGATGATAAGTACTCTTTTATTAGGAAACTCTCTCCACAGTCTGCAGCTAATTACATTTTCAGTGAGGACGAGGTAAAAAAATGGGACCAATTAAGCCTTGCATCAGGAATGGGGCCTGCAGCTTTGCAGCTGCTTGCTAATGGATTGGAAGGTTATGCTGACCAAACAAAGCGAGTTGAGGAACTTTTCGAGAAGATTTGGCCACCCCCAAATGTATGA 1218 45.48 MSFSLQSPPSATIPPSLSPSPSSSSFLQRKLGFSAGLFTPSILISHSPTSLPLTSASSGFSSSLDTGLTSELDAVSSFSQIVPDTVVFDDFERFPPTAATVSSSLLLGICGLPDTIFRNAVDMALADSQCFGLDNPELKYSCIFNKALVNVGGDLAKLVPGRVSTEVDARVAYDTHGIIRKVHDLLKLYNEINVPPERLLFKIPATWQGIEASRLLESEGIQTHLTFVYSFAQAAAAAQAGASVIQIFVGRLRDWARNHSGDPEIEAALKRGEDPGLALVTKAYNYIHKYGYRSKLMAAAVRNKQDLFSLLGVDYIIAPLKVLQSLKESVTTPDDKYSFIRKLSPQSAANYIFSEDEVKKWDQLSLASGMGPAALQLLANGLEGYADQTKRVEELFEKIWPPPNV 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21176913 21182298 + MELO3C005559.2.1 Cme09g01645 338505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01645 405 CDD Transaldolase_TalAB 70 396 IPR004730 GO:0004801|GO:0005737|GO:0006098
Cme09g01645 405 Gene3D Aldolase class I 69 399 IPR013785 -
Cme09g01645 405 SUPERFAMILY Aldolase 69 400 - -
Cme09g01645 405 PANTHER ALDOLASE SUPERFAMILY PROTEIN 1 405 - -
Cme09g01645 405 MobiDBLite consensus disorder prediction 1 21 - -
Cme09g01645 405 Pfam Transaldolase/Fructose-6-phosphate aldolase 116 344 IPR001585 GO:0005975
Cme09g01645 405 PANTHER TRANSALDOLASE 1 405 IPR001585 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01645 K00616 E2.2.1.2, talA, talB; transaldolase [EC:2.2.1.2] - csv:101215470 709.138
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g498 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00398 Chy09g01115 . . Blo19g00230 . Bda09g00091 Bpe08g01438 . . . . . . . . . . . . Bhi12g00411 . . . . . Lcy12g1800 Cla01g00372 Cam01g0391 Cec01g0383 Cco01g0403 Clacu01g0391 Cmu01g0372 Cre09g2139 Lsi09g00401 . . Cme09g01645
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012684 1 1 1 1 1 0 1 1 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 2 1 27