Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01647 ATGATGGCTTCTTTTGGTTACTTATCTCTGTTCCTCCTTCCAATTTGCCTGTTTGTTACATTCTCATCGGCCGCAGATCCGTTCGCTTTCTTTGATTTTGAAGTCTCCTACATCACTGCTTCTCCTCTGGGTATCCCTCAACAGGTTATTGCTATTAATGGGAAGTTTCCTGGTCCTACTGTCAATGTGACTACTAATAACAATGTTGTTATCAATGTCCGGAACAAGTCTGGAGTTCAGCAGCGGCGAAGTTCATGGCAAGATGGAGTTCCAGGAACAAATTGTCCAATTCCTCCCAAGTGGAACTGGACTTACCAGTTTCAAGTTAAGGATCAGATAGGGAGCTTCTTTTACTTTCCATCACTCCATTTCCAGAGAGCGTCGGGTGGATTTGGTGGCATTATTATTAACAATAGGGATGTAATCCCCATTCCTTTTTCAACCCCAGATGGAGACATTACAATTTTGATTGGCGATTGGTACACACGGAATCACACGGCTCTGAGAAAATCCCTTGATGACGGGAAGGATCTTGGAATGCCACATGGTGTTCTTATTAATGGCAAAGGCCCCTACAGATATAATGACACGCTAGTCCCTGATGGTATCGACCATGAAACAATTGAAGTTCATCCAGGAAAAACATATCGGATTCGTGTACACAATGTTGGAATATCTACTAGTCTGAATTTCAGGATCCAAAACCACAATCTTCTTTTAGCTGAAACAGAGGGGTCATATACAGTGCAACAGAATTATACTAGCTTAGACATACATGTAGGACAGTCATATTCATTTTTGGTCACCATGGATCAGAATGCGAGCACTGATTATTACATTGTAGCTAGTGCTCGGTTTGTCAATGAATCACTTTGGAAAAGAGTTACAGGTGTTGCTATCTTGCATTACTCTAATTCCAAAGGAAAGGCAATTGGCCCTCTTCCAGAAGCACCAAATGATGAGTTTGACAAAACTTTCTCAATGAACCAGGCAAGATCAATCAGATGGAATGTATCCGCTAGTGGTGCTCGTCCCAATCCTCAAGGATCATTCAGATATGGCTCAATCAATGTAACTGATGTTTATGTCTTGAAAAATAAGCCTCCTGTGTCAATCAATGGTAAAATGCGAACGACGCTCAGTGGAATCTCATTTGTTAATCCATCTACACCAATCAGATTGGCTGACCAATTCAAATTAAAGGGTGTTTATAAGCTCGACTTCCCCACTAGGCCACTTACAGGACCACCAAAGGCAGAGACATCAGTGATTAATGGAACATATAGAGGGTTTATGGAGGTTATACTGCAGAATAACGACACCAAGATGCAGAGCTATCACATGAATGGATACGCCTTCTTTGTCGTGGGGATGGACTATGGCGAGTGGACTGAGAATAGCAGAGGTACATACAATAAATGGGATGGAATTGCTCGCTCAACAATTCAGGTTTATCCTGGAGCATGGACTGCCATCTTGGTATCTCTTGATAACGTGGGAGTATGGAACATCAGGACAGAGAATCTCGACTCGTGGTATCTTGGGCAAGAGACGTATGTTCGGGTTGTCAATCCTGAGGCTACTAACAAAACAGAACTGCCTATGCCAGACAATGCTCTCTTTTGTGGCCAGCTTAGTAAATTACAAAAGCCTCAAGATATCTCTTCTGCAACTTCAATCACGGGCGATAGATTGAAGATGTTATTCACTCTGCTGATGATGATCTCCACTTTAATCTCTGCTTTGCGCTAA 1752 42.29 MMASFGYLSLFLLPICLFVTFSSAADPFAFFDFEVSYITASPLGIPQQVIAINGKFPGPTVNVTTNNNVVINVRNKSGVQQRRSSWQDGVPGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRASGGFGGIIINNRDVIPIPFSTPDGDITILIGDWYTRNHTALRKSLDDGKDLGMPHGVLINGKGPYRYNDTLVPDGIDHETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILHYSNSKGKAIGPLPEAPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPPVSINGKMRTTLSGISFVNPSTPIRLADQFKLKGVYKLDFPTRPLTGPPKAETSVINGTYRGFMEVILQNNDTKMQSYHMNGYAFFVVGMDYGEWTENSRGTYNKWDGIARSTIQVYPGAWTAILVSLDNVGVWNIRTENLDSWYLGQETYVRVVNPEATNKTELPMPDNALFCGQLSKLQKPQDISSATSITGDRLKMLFTLLMMISTLISALR 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21194490 21199222 + MELO3C005561.2.1 Cme09g01647 338507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01647 583 SUPERFAMILY Cupredoxins 23 165 IPR008972 -
Cme09g01647 583 Pfam Multicopper oxidase 35 139 IPR011707 GO:0005507
Cme09g01647 583 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 13 554 - -
Cme09g01647 583 Gene3D - 29 141 IPR008972 -
Cme09g01647 583 PANTHER MULTI-COPPER OXIDASE 13 554 IPR045087 -
Cme09g01647 583 Pfam Multicopper oxidase 152 305 IPR001117 -
Cme09g01647 583 Gene3D - 355 553 IPR008972 -
Cme09g01647 583 SUPERFAMILY Cupredoxins 147 345 IPR008972 -
Cme09g01647 583 Pfam Multicopper oxidase 392 525 IPR011706 GO:0005507|GO:0016491
Cme09g01647 583 Gene3D - 150 343 IPR008972 -
Cme09g01647 583 SUPERFAMILY Cupredoxins 372 544 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01647 - - - csv:101214991 1150.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g00894 Cme09g01647 CCT
Cme06g00894 Cme09g01647 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01442 Cme-Chr9:19638155 Cme09g01647 Cme-Chr9:21194490 0 dispersed
Cme09g01647 Cme-Chr9:21194490 Cme03g01548 Cme-Chr3:24576867 0 dispersed
Cme01g01626 Cme-Chr1:22070676 Cme09g01647 Cme-Chr9:21194490 0 transposed
Cme10g00109 Cme-Chr10:761655 Cme09g01647 Cme-Chr9:21194490 8.14E-152 transposed
Cme06g00894 Cme-Chr6:6277586 Cme09g01647 Cme-Chr9:21194490 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
Vvi16g429 Blo06g01090 Blo15g00133 . . . Bpe07g00978 . . Cmo16g00204 . . Cma15g01148 . . Sed01g4020 Cpe05g00708 Cpe14g00160 Bhi01g01216 Tan01g0390 Cmetu06g0404 . Hepe07g0250 Mch10g0250 . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 . . . . Lsi05g01323 Csa05g00396 Chy09g01117 Cme06g00894 . . Bda06g00744 . . . . Bma12g01160 . . Cmo15g01208 Cma16g00190 . Car16g00167 . . Cpe13g00220 . . . . . . . Cla05g00795 Cam05g0872 Cec05g0877 Cco05g0882 Clacu05g0863 Cmu05g0819 Cre05g0905 . Csa03g01616 Chy06g00853 Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130