Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01649 ATGGCACTTTCTTCCATTTCTTCACTATCGGCAAAATGTCTACCCTTGAATTCTTCTAAATCAAAGCATCCAAGTTCTCTACAACCTAGGAAACGAATTTCCACGGTATCTCAGATAAACCCACAAAAGGATCAAACTCAAGATTGTTCCGAGAGGAAGCACGCACACATTGGTAAGATTACAGAGCCCAAGAGATGGCAAAAATTGGTTTCAACTGCTTTGGCTGCTGCTGCAGTCATTGGTTTTAGCTCAGGCATGCCTTCAGTTGCTGAACTCAACAAGTATGAGGCTGATACCCGTGGTGAATTTGGAATTGGATCCGCCGCGCAATATGGTTCTGCAGATCTCAGGAAAGCAGTGCATATTAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCAGATTTCAGTGGCTGTACATTCAATGGCGCATATCTAGAAAAAGCTGTTGCATACAAGACAAATTTCTCAGGTGCAGATTTGAGTGACACATTGATGGATCGTATGGTATTAAATGAAGCAAATTTTACAAATGCAGTACTCGTTAGATCGGTGCTAACACGAAGCGATTTAGGCGGTGCCATAATCGTAGGTGCCGACTTCAGCGATGCCGTCATTGACCTTCCTCAGAAGCAAGCCCTTTGCAAGTATGCGAGTGGAACGAACCCAGTGACGGGAGTGAGCACGAGGGCGAGCTTAGGGTGCGGAAACAGCCGGAGAAATGCGTATGGAACGCCGTCGTCTCCACTGCTGAGCGCTCCGCCGCAGCAGTTGCTTGACCGCGACGGTTTCTGCGACCAAGGCACTGGCCTTTGTGAGGCCACTAAATAG 846 46.81 MALSSISSLSAKCLPLNSSKSKHPSSLQPRKRISTVSQINPQKDQTQDCSERKHAHIGKITEPKRWQKLVSTALAAAAVIGFSSGMPSVAELNKYEADTRGEFGIGSAAQYGSADLRKAVHINENFRRANFTSADMRESDFSGCTFNGAYLEKAVAYKTNFSGADLSDTLMDRMVLNEANFTNAVLVRSVLTRSDLGGAIIVGADFSDAVIDLPQKQALCKYASGTNPVTGVSTRASLGCGNSRRNAYGTPSSPLLSAPPQQLLDRDGFCDQGTGLCEATK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21220559 21225495 + MELO3C005562.2.1 Cme09g01649 338509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01649 281 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 1 279 - -
Cme09g01649 281 Gene3D - 109 241 - -
Cme09g01649 281 MobiDBLite consensus disorder prediction 15 45 - -
Cme09g01649 281 Pfam Pentapeptide repeats (8 copies) 176 208 IPR001646 -
Cme09g01649 281 Pfam Pentapeptide repeats (8 copies) 134 170 IPR001646 -
Cme09g01649 281 SUPERFAMILY Pentapeptide repeat-like 113 209 - -
Cme09g01649 281 MobiDBLite consensus disorder prediction 15 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01649 - - - csv:101214507 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00179 Cme-Chr3:2171612 Cme09g01649 Cme-Chr9:21220559 1.90E-12 dispersed
Cme06g01164 Cme-Chr6:9051857 Cme09g01649 Cme-Chr9:21220559 9.84E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g493 . . . . . . . Bma14g00032 . . . . . Car15g01045 . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00405 . Bda07g00011 . . . . . . . . . . . . . Cpe13g00216 Bhi12g00403 . . Lac11g2248 Hepe06g1650 . Lcy12g1795 . . . . . . . Lsi09g00394 . . Cme09g01649
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006392 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 2 2 38