Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01672 ATGCTCGGTTCCGATCTAAAATTCTTCTTGAACAGCTCTGTACATGTAAAACAAGCTACTCAAATTCATGCCCACATTCTCGTCAACGGGCTTCCAAATCTCGAGTCTTGCTTGGTCCGTCAAATCACTCGTTCTCAGTTCACTTGCGCCAGAATTGTATCCCGTTATCTCCAACGAATTCTTCACCATTCACAAAATCCAGATGCTTTCACATGGTCCTGCGCCGTTCGGTTCTTTTCCAAGAATGGTCAGTTCATGGAAGCAATTGCCCATTATGTTCAGATGCAGAGATTGGGGCTGCATCCGAGCACTTTTGCTGTATCCTCGACTTTGAGAGCTTGCGGAAGGATTATGTGTAAGTTTGGTGGGAGGTGTATTCATGCTCAGGTTTATAAGTTGGGGTTTTGTCGCTGTGTTTACGTTCAAACTTCCCTTGTGGATTTTTACTCAAAACTGGGTGATATGGGTTTTGCTCAGAAGGTGTTTGATGATATGACCGAGAAAAATGTGGTTTCGTGGAATTCAATCTTGTCTGGTTATGTGAAAATTGGAAACTTAGTTGACGCTCAGAAAGTGTTTGATGAAATGCCTGTGAAAGATGTCATATCTTGGAATTCGATGTTGACAGGATTCTCCAATTCTGGAAATATGGATCGAGCGTTGTCATTGGAGTTATTCAACCAAATGCTTCAACCCCATTTGAATATCCAACCGGATGAGATGACTTTTGCTAGCGTTATATCTGCTTGTACTCAGCTGGGAAATCTGAGCTATGGTACTTGGATCGAGTCGTATATGGAAAAACTTGGGATTGAGTTGGATGATCATTTGGCGACTGCATTAGTAGATCTATATGCAAAATCCGGGAACATCGACAGGGCATTTGAGCTGTTTAATGATCTGAAAAAGAGGGATTTAGTCGCTTATTCAGCTATGATCTTTGGATGTGGGATAAATGGTAAGGCCCATGAAGCAATCGGGTTATTCAAAGAGATGCTAAGAGTTAACATCTCCCCGAATCTAGTGACGTATGCTGGACTTCTTACAGCGTATAATCATGCTGGTTTAGTAGATGAAGGTTACTTTTGCTTCTCGTCCATGAAGGACCATGGACTTGCGCCACTAGCTGATCATTACGGGATAATGGTGGATCTGTTGGGGAGGGCGGGGCGGTTAGAAGAAGCATATGAGCTTATACGCAGTATGCCAGTGCAGCCAAATGCTGGTGTCTGGGGAGCCTTGCTTCATGCATGTAAATTACATAACAATGTTGAACTTGGTGAGATAGCAGCTCGAAATTGCTCGAAGTCGGTGACTGATACAACCGGATACCGGTCTCTTCTAGCCAACATTTACTCTTCTATGGAGAGGTGGGATGATGCTAAGAGGATGAGAAAAGCCATGAGCAATAAAGTATTTGCCAAGATATCTGGGTGTAGTTGGATGGAGCAATCTGAAAGCTGA 1464 43.24 MLGSDLKFFLNSSVHVKQATQIHAHILVNGLPNLESCLVRQITRSQFTCARIVSRYLQRILHHSQNPDAFTWSCAVRFFSKNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFGGRCIHAQVYKLGFCRCVYVQTSLVDFYSKLGDMGFAQKVFDDMTEKNVVSWNSILSGYVKIGNLVDAQKVFDEMPVKDVISWNSMLTGFSNSGNMDRALSLELFNQMLQPHLNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDLYAKSGNIDRAFELFNDLKKRDLVAYSAMIFGCGINGKAHEAIGLFKEMLRVNISPNLVTYAGLLTAYNHAGLVDEGYFCFSSMKDHGLAPLADHYGIMVDLLGRAGRLEEAYELIRSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKSVTDTTGYRSLLANIYSSMERWDDAKRMRKAMSNKVFAKISGCSWMEQSES 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21420665 21422407 + MELO3C005586.2.1 Cme09g01672 338532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01672 487 Pfam PPR repeat 378 402 IPR002885 -
Cme09g01672 487 Pfam PPR repeat 70 100 IPR002885 -
Cme09g01672 487 Gene3D Tetratricopeptide repeat domain 305 487 IPR011990 GO:0005515
Cme09g01672 487 Gene3D Tetratricopeptide repeat domain 12 122 IPR011990 GO:0005515
Cme09g01672 487 PANTHER OS07G0578800 PROTEIN-RELATED 161 484 IPR045215 GO:0003723|GO:0009451
Cme09g01672 487 PANTHER OS07G0578800 PROTEIN-RELATED 53 165 IPR045215 GO:0003723|GO:0009451
Cme09g01672 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Cme09g01672 487 Pfam E motif 421 483 IPR046848 -
Cme09g01672 487 PANTHER OS08G0162200 PROTEIN 161 484 - -
Cme09g01672 487 PANTHER OS08G0162200 PROTEIN 53 165 - -
Cme09g01672 487 Pfam PPR repeat 169 196 IPR002885 -
Cme09g01672 487 Gene3D Tetratricopeptide repeat domain 142 275 IPR011990 GO:0005515
Cme09g01672 487 Coils Coil 485 487 - -
Cme09g01672 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Cme09g01672 487 Pfam PPR repeat family 199 250 IPR002885 -
Cme09g01672 487 Pfam PPR repeat family 305 351 IPR002885 -
Cme09g01672 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Cme09g01672 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Cme09g01672 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Cme09g01672 487 TIGRFAM PPR: pentatricopeptide repeat domain 379 402 IPR002885 -
Cme09g01672 487 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Cme09g01672 487 TIGRFAM PPR: pentatricopeptide repeat domain 342 374 IPR002885 -
Cme09g01672 487 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Cme09g01672 487 TIGRFAM PPR: pentatricopeptide repeat domain 279 307 IPR002885 -
Cme09g01672 487 TIGRFAM PPR: pentatricopeptide repeat domain 171 199 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01672 - - - bhj:120067396 573.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01672 Cme-Chr9:21420665 Cme08g01172 Cme-Chr8:8286741 2.62E-106 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31