Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01674 ATGGCTGATATCTACGTCTGGCTCCTCTCCTTCTTTTTTATCATTGCGCTTCTCATGCTTGTCGTTTTTCAGCTAATGTGCTTAGCTGATCTTGAGTTTGATTATATCAACCCTTATGACTCCTCATCACGGATAAACAAAGTGGTCGTGCCTGAGTTCATTACCCAAGGAGTCTTGTGCATCTTCTATCTCTTGTCAGGGCATTGGGGGCTTGCCTATCTCTTCATATATGCCCGGGTACACTCAGCGAAATCACCTGATATTCATGGAAGGTTCGAAGTCATATTGTCTCTGCAAGAAAATAGATTTACAAAGAGGATGATGAAGAATTTTCTGACGTTACCTGATCCTTCGGCGCTGGCCGCTGTGTCATCTTCTTCGGAATTAGACCCAAAACGGTCTAAGCTCTTCTGCATTGAGAGTTCTGTAATCGACTGGGAATGGCAGTCTCTTCTACTCCTTGTTTTCAACCTCAAATCAAAGTTTCTCAGCCTTCTCTCAGGTCCATTCGGAGGAGTAAAACCTAATATTACTGCTGAATTCTATGGAAAAGTTCATAAAAGTTTGCAGGCCAGGACACATAACAAAAAGGCTGCTCGTGCACAATTTCAGATGATGCCTATAGGGACACCAAGGGTGCCTTACAGAAATCCTGGGGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCACTATATCGAGAACGAGTTATCTTCATTGGGCAAAACATTGATGAAGAGTTTAGCAATCAAATTTTGGCAACAATGCTATATCTTGACAGCATTGAAACTTCCAGGAAATTTTATATGTACATAAATGGCCCAGGTGGAGATCTAACTCCAACCATGGCCCTCTACGATACAATGCAGAGCTTGAATAGTCCTGTAGCTACACATTGTGTGGGTTATGCCTATAATATGGCAGCCTTTCTTCTAGCAGCTGGAGAAAAGGGTAACCGCTTTGCTATGCCACTATCAAGAATTGCTTTGCAATCCCCAGCCGGATCGGCTCGTGGCCAGGCTGATGATATTCAAAATGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTTTGAGGAGCTTTCTAAGAAAACAGGCCAGCCTGTTGAAAAGATTAGCAAGGACTTGAGTCGATTGAAGCCATTTAATGCGCAAGAAGCTCTTGATTATGGACTTATTGACCGTATAGCTAGGCCACCGCGCATTAAGGCTGATGCACCTCGTAAGGATGCTGGAACAGGGCTTGGTTAG 1254 43.62 MADIYVWLLSFFFIIALLMLVVFQLMCLADLEFDYINPYDSSSRINKVVVPEFITQGVLCIFYLLSGHWGLAYLFIYARVHSAKSPDIHGRFEVILSLQENRFTKRMMKNFLTLPDPSALAAVSSSSELDPKRSKLFCIESSVIDWEWQSLLLLVFNLKSKFLSLLSGPFGGVKPNITAEFYGKVHKSLQARTHNKKAARAQFQMMPIGTPRVPYRNPGEGTWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSIETSRKFYMYINGPGGDLTPTMALYDTMQSLNSPVATHCVGYAYNMAAFLLAAGEKGNRFAMPLSRIALQSPAGSARGQADDIQNEANELLRIRDYLFEELSKKTGQPVEKISKDLSRLKPFNAQEALDYGLIDRIARPPRIKADAPRKDAGTGLG 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21426760 21433717 + MELO3C005589.2.1 Cme09g01674 338534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01674 417 SUPERFAMILY ClpP/crotonase 220 401 IPR029045 -
Cme09g01674 417 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 209 401 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme09g01674 417 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 173 411 - -
Cme09g01674 417 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 173 411 IPR023562 -
Cme09g01674 417 Pfam Clp protease 224 399 IPR023562 -
Cme09g01674 417 Pfam Cornichon protein 6 80 IPR003377 GO:0016192
Cme09g01674 417 Gene3D - 210 400 - -
Cme09g01674 417 CDD S14_ClpP_2 227 397 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme09g01674 417 SMART Cornichon_2 4 98 IPR003377 GO:0016192
Cme09g01674 417 PRINTS Clp protease catalytic subunit P signature 319 338 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme09g01674 417 PRINTS Clp protease catalytic subunit P signature 227 242 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme09g01674 417 PRINTS Clp protease catalytic subunit P signature 298 315 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme09g01674 417 PRINTS Clp protease catalytic subunit P signature 267 287 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cme09g01674 417 PRINTS Clp protease catalytic subunit P signature 376 395 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01674 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - zju:107406406 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00116 Cme-Chr1:803321 Cme09g01674 Cme-Chr9:21426760 2.55E-23 transposed
Cme04g01591 Cme-Chr4:23216385 Cme09g01674 Cme-Chr9:21426760 5.35E-37 transposed
Cme05g01600 Cme-Chr5:25155342 Cme09g01674 Cme-Chr9:21426760 6.36E-22 transposed
Cme06g01453 Cme-Chr6:13580924 Cme09g01674 Cme-Chr9:21426760 6.84E-36 transposed
Cme06g02409 Cme-Chr6:31238012 Cme09g01674 Cme-Chr9:21426760 2.01E-37 transposed
Cme06g02527 Cme-Chr6:32315122 Cme09g01674 Cme-Chr9:21426760 2.65E-32 transposed
Cme07g02093 Cme-Chr7:25659545 Cme09g01674 Cme-Chr9:21426760 8.72E-43 transposed
Cme09g00939 Cme-Chr9:13136246 Cme09g01674 Cme-Chr9:21426760 6.51E-13 transposed
Cme11g00183 Cme-Chr11:2209560 Cme09g01674 Cme-Chr9:21426760 2.02E-33 transposed
Cme11g02515 Cme-Chr11:31661052 Cme09g01674 Cme-Chr9:21426760 1.94E-18 wgd
Cme06g02638 Cme-Chr6:33557459 Cme09g01674 Cme-Chr9:21426760 1.59E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59