Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g01675 | ATGGAGGGAAGGGATGGTGGTGGTGCAAGTAGTGGGGTTACTGTGGTGGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCGAGGACTTCCGATAACCCACCGCAGACTGGTGGATCAACAACGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAGGTATCAGGACAGCCTCCGCCGCCAACGGCGGGCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGGCCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTCATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGTGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTAGATAATTTAGGTGACTGGGTTCCGTGTTCTCTTGGTGCAAATTTTACGCCTCATATCATCACTGTCAATGCAGGCGAGGATGTCACAATGAAGATAATTTCCTTTTCTCAACAAGGACCTCGAGCTATATGCATTTTATCTGCAAACGGTGTAATCTCAAGTGTCACTCTCCGCCAGCCTGACTCCTCTGGAGGAACACTAACTTATGAGGGACGATTTGAAATACTTTCCTTGTCCGGCTCATTCATGCCTAGTGATAATGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTCGTAGGTGGTGGAGTAGCTGGTCTATTAGTAGCTGCTAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTGTCAGGAAATCAACATGAACAGAAACCGAAAAAGCCAAAACATGATACCATCTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGTGTCGATCCTAAGTCCAACCTGTCACCTTCCAGTTCCTTTCGAGGCGATAACTGGTCGATGCTGCCAACTGATTCAAGAAATAAGTCAACTGATATCAATGTATCTCTACCCAGCGCTTGA | 993 | 49.85 | MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTTPPATQSTSTPSASAQVSGQPPPPTAGSSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPVSAVSKSKFEVDNLGDWVPCSLGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA | 330 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 21436169 | 21440689 | - | MELO3C005590.2.1 | Cme09g01675 | 338535 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g01675 | 330 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 147 | 260 | IPR005175 | - | |
| Cme09g01675 | 330 | MobiDBLite | consensus disorder prediction | 264 | 330 | - | - | |
| Cme09g01675 | 330 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Cme09g01675 | 330 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 | 10 | 328 | - | - | |
| Cme09g01675 | 330 | MobiDBLite | consensus disorder prediction | 294 | 330 | - | - | |
| Cme09g01675 | 330 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 10 | 328 | IPR039605 | GO:0003680 | |
| Cme09g01675 | 330 | CDD | DUF296 | 146 | 237 | IPR005175 | - | |
| Cme09g01675 | 330 | MobiDBLite | consensus disorder prediction | 29 | 64 | - | - | |
| Cme09g01675 | 330 | ProSiteProfiles | PPC domain profile profile. | 142 | 281 | IPR005175 | - | |
| Cme09g01675 | 330 | Gene3D | - | 147 | 276 | - | - | |
| Cme09g01675 | 330 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 144 | 265 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme09g01500 | Cme-Chr9:20170295 | Cme09g01675 | Cme-Chr9:21436169 | 2.60E-83 | dispersed | |
| Cme09g01675 | Cme-Chr9:21436169 | Cme11g02151 | Cme-Chr11:28950150 | 7.28E-65 | dispersed | |
| Cme10g01713 | Cme-Chr10:23718509 | Cme09g01675 | Cme-Chr9:21436169 | 1.39E-119 | transposed | |
| Cme06g00921 | Cme-Chr6:6454924 | Cme09g01675 | Cme-Chr9:21436169 | 5.51E-85 | wgd | |
| Cme06g00256 | Cme-Chr6:1564295 | Cme09g01675 | Cme-Chr9:21436169 | 1.94E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g01675 | - | - | csv:101210208 | 556.599 |