Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g01678 | ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACAACATCCATTCCACACCAACACCAACAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGTCTCAAACGCGACCGTGATGACGACACCAACAACTCCAACCCCAACTCCGCTGGCGACCCCACCCCCGACGGAGAAATCACTCGTCGCCCTAGAGGACGCCCCGCTGGATCCAAAAACAAACCTAAACCACCCATTATCATTACTCGCGACAGCGCCAACGCTCTCCGTACTCACGTCATCGAAGTCACCGATGGCTGCGACATCGTTGATAGCGTCGCTACCTTCGCTCGACGTCGTCAACGTGGTGTTTGTATTATGAGTGGTACCGGTACGGTTACAAACGTTACTCTCCGTCAACCCGCTTCACCCGGTGCAATTATCAACTTACATGGCCGGTTCGAGATCTTATCTCTTGCCGGTTCGTTTCTTCCTCCTCCTGCTCCTCCAGCTGCTACTACTTTGACTATTTATCTCGCTGGTGGTCAAGGGCAAGTCGTCGGTGGTAGCGTTGTTGGTACTTTGATCGCTTCCGGTCCTGTCGTTATTATGGCTGCTTCGTTTAGTAACGCGGCGTATGAACGGCTTCCATTGGAGGAAGACGATCAACCACCGCTTCCGTCGCTGCAAGGCGGCGGGGGAATTGGGTCGCCGGATGAAGTTGGGCAGTCACAAATAACGGCGCAAACGGCACATCATCAACAACAGCAACAGAATCAACAACAACAGCAGCAACTACTTAACGATGGTAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCGGAATCACCGTATTGGGCAACTGCCCGTCCTCCGTACTAA | 912 | 52.52 | MDSHSLPPPFHTRDFHLQQHPFHTNTNNNNSEEEHSTTTTRLKRDRDDDTNNSNPNSAGDPTPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIINLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPPLPSLQGGGGIGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESPYWATARPPY | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 21490222 | 21491338 | + | MELO3C005593.2.1 | Cme09g01678 | 338538 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g01678 | 303 | PIRSF | ESCAROLA | 10 | 303 | IPR014476 | GO:0003680 | |
| Cme09g01678 | 303 | MobiDBLite | consensus disorder prediction | 240 | 270 | - | - | |
| Cme09g01678 | 303 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
| Cme09g01678 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 3 | 303 | IPR014476 | GO:0003680 | |
| Cme09g01678 | 303 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 93 | 224 | - | - | |
| Cme09g01678 | 303 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Cme09g01678 | 303 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
| Cme09g01678 | 303 | CDD | DUF296 | 97 | 163 | IPR005175 | - | |
| Cme09g01678 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED | 3 | 303 | - | - | |
| Cme09g01678 | 303 | Gene3D | - | 96 | 226 | - | - | |
| Cme09g01678 | 303 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 97 | 210 | IPR005175 | - | |
| Cme09g01678 | 303 | ProSiteProfiles | PPC domain profile profile. | 93 | 232 | IPR005175 | - | |
| Cme09g01678 | 303 | MobiDBLite | consensus disorder prediction | 219 | 303 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme09g01678 | Cme-Chr9:21490222 | Cme11g02481 | Cme-Chr11:31446850 | 7.59E-73 | dispersed | |
| Cme11g02522 | Cme-Chr11:31705602 | Cme09g01678 | Cme-Chr9:21490222 | 5.75E-74 | wgd | |
| Cme06g00250 | Cme-Chr6:1512743 | Cme09g01678 | Cme-Chr9:21490222 | 1.06E-71 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g01678 | - | - | csv:101209716 | 509.99 |