Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01679 ATGGCTGCTTCTGGGGGTACTAGTTATAGAAATGGTGCCACTTCTAGAAACTCCCTTAAGCTCGATAAGCCCTTTTCTGCTAATTCCTCCAACTCTAAGTCTTCTCTTAAGTCAAAGTCTCTTCCCAATTCAGCTCTTCGCCGCAGTAGCCCTGCTGCTCTTGGAGTTGCCAAGGATGATGGTGGAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCGCGCAATACAGAAGAATCAATTGCTGATGCTGATTTTGCTGATTGTGTTGAGTTGCAGCCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGTCGTGGCGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGTCAAACTGGTACTGGTAAAACATATACTCTTGGAAGACTAGGAGAGGAAGACACTGCTGATCGTGGAATCATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGACTGATTCTGTCTCAGTATCCTACCTGCAGGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTTGAAGATCCTAAAACTGGAGATGTTTCAGTACCTGGGGCTACCCTCGTAGAAATTAGACACCAAGAGAGCTTTGTGGAACTACTAAGGTTGGGGGAAGCTCATCGGTTTGCTGCGAATACAAAACTGAACACTGAATCTTCCCGTAGTCATGCAATTCTCATGGTACACGTAAAACGGTCTCTAAAAGGAAGGGATTCAACTCTGTCAAGTGATAATTCTCATTTAGTTAAGACGCTGAAACCTCCAATTGTTCGGAAGGGTAAATTAGTGGTGGTAGATCTTGCTGGTTCAGAGCGTATTGACAAGTCAGAGGCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCATTAGGGAAATGCATAAATGCACTAGCGGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTGACAAGATTACTTCGGGATTCATTTGGGGGAACGGCAAGAACTTCATTGGTTATTACTATTGGTCCTTCACCTCGGCATCGTGGAGAGACCACGAGTACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATAAAAGAAGAATTTGATTATAAGAGTTTGTCGAGAAGGTTAGACATTCAATTAGACAAACTGATTGCAGAACATGAAAGGCAGCAAAAGGCATTTGAGATTGAAATTGAGAGAATTACCAAAGAAGCACAGGATCGCATATCCGAGGCTGATAGAAGTCATTCAAATGCCCTAGAGAAGGAAAGGCTGAAATATCAGAAGGATTACATGGAATCAATCAAGAAGCTTGAAGATCAATTGATGGTGAAGCAGAAGAAGCTTGGTGGGGAGAAAGTAATTAATGAAGAAGTTGCTGCATCTGCTTCTAGTGTAATTGCTAATGGGGAGGGTTTGACAGTGTCTGCTGACAAGGAAGTGGCAGAGCTAAAGAAGTTGGTTAAAAAGGAAATAGTTTTGAGGAAAGCAGCAGAAGAGGAAGTTAACAATCTTAGAAATCAAGTAGCCCAACTGAAGAGATCAGAGATCTCATGCAATTCAGAGATCTTAAAGCTCCGCAAAACTCTGGAGGATGAGCAAAATCAGAAAAAAAAACTAGAAGGAGATATAGCTATGCTACAGAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGCATTATGTTTTAACAAGAGAGCATATGGTTTATGTGCAGACCAGTAGACGACTAGACAGAGGTGAGCCTGGTAAAGTTCTCGGTTCTCTAGATTCTCTCGTGCAACAAGTTAAGCACTCACAGGCTCAGGATGCTGGAAACGGGGAGAAGGCTTCAGTGGCCAAACTCTTTGAGCAAGTTGGACTGCAAAAGATCTTGTCGTTGCTGGAAGCTGAAGATTATGACGTCAGGATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAAATTGTTGAGGCTGGAGGCCTTTCATCTTTGCTGATGCTACTCAGAAGCACCGAGGATGAGACAATTCACAGAGTTGCTGCAGGGGCGATTGCAAATCTAGCAATGAATGAGACCAACCAAGAACTCATTATGTCCCAAGGAGGCATTAGCTTACTGTCCATGACCGCTGCCAACGCTGAGGATCCCCAAACGCTTCGTATGGTTGCCGGAGCAATCGCCAATTTATGTGGCAATGATAAGTTGCAGACGAAGCTAAGGGGCGAAGGCGGTATTAAGGCATTGCTTGGTATGGTAAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTCGCAAAGTGCGAGTCGAGGGCCTCTACACAAGGGACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAACGCCAACAATGAAGCATCCACTATCAAACGACATATCGAACTTGCACTCTGTCATTTAGCACAGCATGAAGTGAACGCAAAAGACATGATCATCGGAGGTGCCCTATGGGAACTGGTTCGAATATCCAGAGACTGTTCACGGGAAGACATAAGAACTCTTGCACATCGAACATTAATATCAAGTCCAACATTTCAAGCCGAAATGAGGCGATTACGAATAGATTATTGA 2769 43.55 MAASGGTSYRNGATSRNSLKLDKPFSANSSNSKSSLKSKSLPNSALRRSSPAALGVAKDDGGVPGRVRVAVRLRPRNTEESIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLETDSVSVSYLQDLLDPANDNISIVEDPKTGDVSVPGATLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLSSDNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSEAGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFEIEIERITKEAQDRISEADRSHSNALEKERLKYQKDYMESIKKLEDQLMVKQKKLGGEKVINEEVAASASSVIANGEGLTVSADKEVAELKKLVKKEIVLRKAAEEEVNNLRNQVAQLKRSEISCNSEILKLRKTLEDEQNQKKKLEGDIAMLQSQLLQLSFEADEHYVLTREHMVYVQTSRRLDRGEPGKVLGSLDSLVQQVKHSQAQDAGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSMTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCRHPDVLAQVARGIANFAKCESRASTQGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMIIGGALWELVRISRDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21494107 21502504 - MELO3C005594.2.1 Cme09g01679 338539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01679 922 CDD KISc 66 399 - -
Cme09g01679 922 MobiDBLite consensus disorder prediction 1 47 - -
Cme09g01679 922 Coils Coil 472 492 - -
Cme09g01679 922 PRINTS Kinesin heavy chain signature 252 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01679 922 PRINTS Kinesin heavy chain signature 142 163 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01679 922 PRINTS Kinesin heavy chain signature 300 318 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01679 922 PRINTS Kinesin heavy chain signature 351 372 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01679 922 SMART arm_5 778 818 IPR000225 GO:0005515
Cme09g01679 922 SMART arm_5 654 693 IPR000225 GO:0005515
Cme09g01679 922 SMART arm_5 694 735 IPR000225 GO:0005515
Cme09g01679 922 SMART arm_5 736 777 IPR000225 GO:0005515
Cme09g01679 922 Coils Coil 567 594 - -
Cme09g01679 922 ProSitePatterns Kinesin motor domain signature. 299 310 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme09g01679 922 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 705 748 IPR000225 GO:0005515
Cme09g01679 922 SMART kinesin_4 64 409 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01679 922 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 664 706 IPR000225 GO:0005515
Cme09g01679 922 Gene3D - 755 908 IPR011989 -
Cme09g01679 922 Gene3D - 633 754 IPR011989 -
Cme09g01679 922 Gene3D Kinesin motor domain 59 431 IPR036961 -
Cme09g01679 922 PANTHER KINESIN-LIKE PROTEIN KIN-UA 48 914 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cme09g01679 922 Coils Coil 428 448 - -
Cme09g01679 922 Pfam Armadillo/beta-catenin-like repeat 697 734 IPR000225 GO:0005515
Cme09g01679 922 MobiDBLite consensus disorder prediction 1 59 - -
Cme09g01679 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 439 IPR027417 -
Cme09g01679 922 Coils Coil 525 559 - -
Cme09g01679 922 ProSiteProfiles Kinesin motor domain profile. 66 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01679 922 SUPERFAMILY ARM repeat 654 905 IPR016024 -
Cme09g01679 922 PANTHER KINESIN-RELATED 48 914 IPR027640 GO:0003777|GO:0007018
Cme09g01679 922 Pfam Kinesin motor domain 72 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01679 - - K10396 csv:101209471 1630.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01249 Cme-Chr3:22104780 Cme09g01679 Cme-Chr9:21494107 2.85E-99 dispersed
Cme09g01679 Cme-Chr9:21494107 Cme08g02374 Cme-Chr8:30624789 3.80E-53 dispersed
Cme06g00249 Cme-Chr6:1500202 Cme09g01679 Cme-Chr9:21494107 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g464 . . . . . . . . . . . Cma15g01176 . Car15g01064 . . . . . . . . . . . . . . . . . Cone8ag0352 . . . . . Chy09g01147 . . . . . . . . . . . Cmo15g01237 . . Car06g00966 . . . Bhi12g00358 . . . . . . . . . . . . . . . . Cme09g01679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80