Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01702 ATGGCTTCTTCTTCTTCTTTAAGCTTCAATCTCTTCATGGTGGCATTGGTTTTGGCCATCTCCATAAGATCAACCCTCGCTGTGTTCCGACCAAGCCCATGGAAGCTTGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCCAAACTATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACCAATGGGTATGGAACTGATACTGTGGCTTTAAGCTCGACACTGTTCAACAACGGCTACGCTTGCGGGGCTTGCTTTCAAATCAAATGCGTGCAGTCGAAGGCATGCTACGCAAATGTGCCATTCACCACCGTGACAGCCACCAACCTGTGCCCGCCAAACTGGTCGCAGGACTCCAACGCCGGTGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCTAAACCTGCCTTCATGAAGATCGCTTGGTGGAAGGCTGGAATTATCCCTGTTCAGTACCGCAGGGTTCCATGTGTGAAGAAAGGAGGAGTTCGTTTCAGCCTACAAGGAAATGGATATTGGTTATTAGTTTATGTGATGAATGTAGGTGGAGGAGGAGATGTATATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAACTGGGGAGCTTCATATCAAGCTTTTGCTTCATTGGGTGGCCAATCACTTTCATTCAGAATCACTTCTTACACAACTAGAGAAACACTTACTCTATGGAATGTTCTTCCTTCAAATTGGCGAGTTGGGTTGACTTACAATTCCAATTTCAACTTCCATTGA 783 46.62 MASSSSLSFNLFMVALVLAISIRSTLAVFRPSPWKLAHATFYGDETASQTMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGACFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIIPVQYRRVPCVKKGGVRFSLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFASLGGQSLSFRITSYTTRETLTLWNVLPSNWRVGLTYNSNFNFH 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21654358 21656546 + MELO3C005613.2.1 Cme09g01702 338562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01702 260 SMART dpbb_1 69 155 IPR007112 -
Cme09g01702 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Cme09g01702 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Cme09g01702 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Cme09g01702 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cme09g01702 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cme09g01702 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Cme09g01702 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Cme09g01702 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cme09g01702 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cme09g01702 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cme09g01702 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cme09g01702 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cme09g01702 260 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cme09g01702 260 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Cme09g01702 260 Gene3D - 165 260 IPR036749 -
Cme09g01702 260 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Cme09g01702 260 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Cme09g01702 260 PANTHER EXPANSIN-A7 4 260 - -
Cme09g01702 260 Pfam Lytic transglycolase 69 155 IPR009009 -
Cme09g01702 260 Gene3D - 19 160 IPR036908 -
Cme09g01702 260 PANTHER EXPANSIN-A15 4 260 IPR002963 GO:0009664
Cme09g01702 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
Cme09g01702 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g02660 Cme09g01702 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01702 Cme-Chr9:21654358 Cme08g02411 Cme-Chr8:30997262 1.84E-93 dispersed
Cme06g02660 Cme-Chr6:33714951 Cme09g01702 Cme-Chr9:21654358 3.17E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01702 - - csv:101221231 533.487