Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01706 ATGGTGAGAGGGAAAACACAAATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGAGAAGAAATGGGTTACTGAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACCATTGATCGATATCAAAACAGAACCAAAGATTTGATGTCGAGTAACAGCACAGCCACTGAAGATGTGCAGTTGGAGAAGGAATACGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTATTGGGAGATGGGTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAGAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGGTAAACTTTGTTATTAAATATTCATAA 456 37.72 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNSTATEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKVNFVIKYS 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21690768 21696345 - MELO3C005617.2.1 Cme09g01706 338566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01706 151 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cme09g01706 151 PANTHER MADS BOX PROTEIN 1 146 - -
Cme09g01706 151 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme09g01706 151 ProSiteProfiles K-box domain profile. 88 151 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme09g01706 151 Pfam K-box region 88 147 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme09g01706 151 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cme09g01706 151 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme09g01706 151 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Cme09g01706 151 PANTHER MADS-BOX PROTEIN SOC1 1 146 - -
Cme09g01706 151 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Cme09g01706 151 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme09g01706 151 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme09g01706 151 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme09g01706 151 Coils Coil 122 145 - -
Cme09g01706 151 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01706 Cme-Chr9:21690768 Cme11g02324 Cme-Chr11:30303986 1.40E-43 dispersed
Cme11g02531 Cme-Chr11:31756996 Cme09g01706 Cme-Chr9:21690768 3.04E-62 wgd
Cme06g00949 Cme-Chr6:6728550 Cme09g01706 Cme-Chr9:21690768 1.86E-53 wgd
Cme06g00227 Cme-Chr6:1373704 Cme09g01706 Cme-Chr9:21690768 2.95E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41981 PF01486 K-box 2.80E-15 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01706 - - csv:101220518 266.929