Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g01708 | ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACAGTCAATTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCATGAGAGACAAGAGCTTGACAATTTTCTGGCACAGTACATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCGTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCAGACGACGAAGATGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGATGCACACGACATGATGGGATTTGGGCCACTGCTTCCAACTGAATCCGAAAGGTCATTGATGGAGAGGGTCCGCCAAGAACTAAAGATTGAGCTAAAACAGGGTTTCAAGTCGAGAATTGAAGATGTGAGAGAGGAAATATTAAGAAAAAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCCAAGCTTGTGGAGGAGACAGGATTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGAAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGCGATAA | 903 | 45.85 | MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 21722415 | 21731186 | + | MELO3C005620.2.1 | Cme09g01708 | 338568 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g01708 | 300 | SMART | HOX_1 | 225 | 290 | IPR001356 | GO:0003677 | |
Cme09g01708 | 300 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cme09g01708 | 300 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 300 | - | - | |
Cme09g01708 | 300 | ProSiteProfiles | ELK domain profile. | 203 | 223 | IPR005539 | GO:0003677 | |
Cme09g01708 | 300 | Gene3D | - | 222 | 296 | - | - | |
Cme09g01708 | 300 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 2 | 300 | - | - | |
Cme09g01708 | 300 | Pfam | KNOX2 domain | 96 | 146 | IPR005541 | GO:0003677|GO:0005634 | |
Cme09g01708 | 300 | CDD | homeodomain | 226 | 287 | IPR001356 | GO:0003677 | |
Cme09g01708 | 300 | Pfam | KNOX1 domain | 35 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
Cme09g01708 | 300 | SUPERFAMILY | Homeodomain-like | 225 | 290 | IPR009057 | - | |
Cme09g01708 | 300 | SMART | KNOX2_2 | 92 | 147 | IPR005541 | GO:0003677|GO:0005634 | |
Cme09g01708 | 300 | SMART | KNOX1_2 | 33 | 77 | IPR005540 | GO:0003677|GO:0005634 | |
Cme09g01708 | 300 | Pfam | Homeobox KN domain | 243 | 282 | IPR008422 | GO:0003677|GO:0006355 | |
Cme09g01708 | 300 | ProSiteProfiles | 'Homeobox' domain profile. | 223 | 286 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01594 | Cme-Chr3:24942792 | Cme09g01708 | Cme-Chr9:21722415 | 5.01E-117 | dispersed | |
Cme09g01708 | Cme-Chr9:21722415 | Cme10g00541 | Cme-Chr10:3457746 | 1.35E-25 | dispersed | |
Cme09g01708 | Cme-Chr9:21722415 | Cme07g00094 | Cme-Chr7:577212 | 1.10E-131 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41982 | PF03791 | KNOX2 | 7.60E-18 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g01708 | - | - | csv:101206054 | 568.54 |