Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01708 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACAGTCAATTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCATGAGAGACAAGAGCTTGACAATTTTCTGGCACAGTACATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCGTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCAGACGACGAAGATGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGATGCACACGACATGATGGGATTTGGGCCACTGCTTCCAACTGAATCCGAAAGGTCATTGATGGAGAGGGTCCGCCAAGAACTAAAGATTGAGCTAAAACAGGGTTTCAAGTCGAGAATTGAAGATGTGAGAGAGGAAATATTAAGAAAAAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCCAAGCTTGTGGAGGAGACAGGATTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGAAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGCGATAA 903 45.85 MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21722415 21731186 + MELO3C005620.2.1 Cme09g01708 338568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01708 300 SMART HOX_1 225 290 IPR001356 GO:0003677
Cme09g01708 300 MobiDBLite consensus disorder prediction 1 20 - -
Cme09g01708 300 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 300 - -
Cme09g01708 300 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Cme09g01708 300 Gene3D - 222 296 - -
Cme09g01708 300 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 300 - -
Cme09g01708 300 Pfam KNOX2 domain 96 146 IPR005541 GO:0003677|GO:0005634
Cme09g01708 300 CDD homeodomain 226 287 IPR001356 GO:0003677
Cme09g01708 300 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Cme09g01708 300 SUPERFAMILY Homeodomain-like 225 290 IPR009057 -
Cme09g01708 300 SMART KNOX2_2 92 147 IPR005541 GO:0003677|GO:0005634
Cme09g01708 300 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Cme09g01708 300 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Cme09g01708 300 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01594 Cme-Chr3:24942792 Cme09g01708 Cme-Chr9:21722415 5.01E-117 dispersed
Cme09g01708 Cme-Chr9:21722415 Cme10g00541 Cme-Chr10:3457746 1.35E-25 dispersed
Cme09g01708 Cme-Chr9:21722415 Cme07g00094 Cme-Chr7:577212 1.10E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41982 PF03791 KNOX2 7.60E-18 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01708 - - csv:101206054 568.54