Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01717 ATGGATTGGTTCGCTCAATTTTCTGACCCACTTCCTTATTACCCCAATTGTAGTTACAAATCTGAATCCTCTTCTACTCTTTCCGACGCCGGAACACCTCCTCAAACAGTGGTTAACTCCGACGAAGAAGTTATTCTCGCCTCCAACCGCCCAAAGCGCCGTGCCGGTCGCCGAATTTTTAAAGAAACTAGACATCCGGTTTACAGAGGAGTCCGGCAGAGGAATAACGACAAATGGGTTTGTGAGCTGAGAGAGCCGAATAAAAAGACGAGGATTTGGCTCGGGACATACCCAACGGCGGAGATGGCAGCTCGTGCACATGACATAGCGGCACTAGCGTTAAGAGGGAAATCCGCTTGCCTAAATTTCGCTGACTCTGCTTGGCGGTTTCCAATTCCGGCGAGTGATGACCCGGCTGTGATTAGAGAGGCGGCTGTGAGGGCGGCGAATGAGGGTAGAGATGAGGAATGTAATGTGGGTCGGGAAGAGGATGACGGCGGTTCGAATCAGCAGGAGGCGTATCCTGACCGGACGGATTATGTGGACGATGAGACTATGTCGAATATGCCAATGTTGCTTGCCAACATGGCGGAAGGACTACTTCTTTCTCCTCCATCTTTTTGTGTCAATGAAGACGTGGAGTGGGATGATGTGGCAACGAACGACGATGTGTCATTGTGGAGCTTTTAG 690 50.58 MDWFAQFSDPLPYYPNCSYKSESSSTLSDAGTPPQTVVNSDEEVILASNRPKRRAGRRIFKETRHPVYRGVRQRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDIAALALRGKSACLNFADSAWRFPIPASDDPAVIREAAVRAANEGRDEECNVGREEDDGGSNQQEAYPDRTDYVDDETMSNMPMLLANMAEGLLLSPPSFCVNEDVEWDDVATNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21805168 21806264 - MELO3C005629.2.1 Cme09g01717 338577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01717 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Cme09g01717 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cme09g01717 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Cme09g01717 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Cme09g01717 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Cme09g01717 229 MobiDBLite consensus disorder prediction 151 175 - -
Cme09g01717 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Cme09g01717 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Cme09g01717 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 229 - -
Cme09g01717 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cme09g01717 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00960 Cme09g01717 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02426 Cme-Chr4:30905402 Cme09g01717 Cme-Chr9:21805168 1.98E-43 dispersed
Cme05g01995 Cme-Chr5:28458946 Cme09g01717 Cme-Chr9:21805168 1.12E-32 dispersed
Cme08g01225 Cme-Chr8:8651739 Cme09g01717 Cme-Chr9:21805168 1.43E-38 dispersed
Cme09g01446 Cme-Chr9:19673450 Cme09g01717 Cme-Chr9:21805168 2.83E-66 dispersed
Cme09g01717 Cme-Chr9:21805168 Cme02g01473 Cme-Chr2:21525077 5.08E-30 dispersed
Cme09g01717 Cme-Chr9:21805168 Cme09g01718 Cme-Chr9:21822340 1.11E-28 tandem
Cme06g00959 Cme-Chr6:6823248 Cme09g01717 Cme-Chr9:21805168 4.14E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41983 PF00847 AP2 5.00E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01717 - - csv:101204618 426.017