Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01718 ATGGCTGACCAAAAGGCGCTTCCAATTAATGAGAGCCTAATAGACCAATCTCTTGATCATAAATCTCCTTCCCCAATATCTAAACCAATTCTCATTGACCCTTTTGTTTCTTCTTCTGTCCCCACTGATCCCCAAATTCCAAATTCTAAGTCACAAGAACAACTCCCACCACCACCTCCTCCTCCATCATCCCTGCCTTCTTCTATAATTTCTCCTCCTCCTCCTTCTTCTTCTTCAACAACTAAGAAGCATTCTTTGTATAGAGGGATCCGGTGCCGAAGTGGGAAATGGGTGTCAGAGATTCGCGAGCCGCGTAAGACGACGCGCATATGGCTTGGTACGTTTCCAACTGCTGAGATGGCTGCGGCTGCTTACGATGTTGCTGCCCTTGCCCTCCGTGGTGGCGATGCTGTCCTTAACTTCCCTGCCTCCATTCCAACCTACCCCGTTCCCGCGTCGAATTCTCCAGTTGACATTCGCACTGCTGCCTCCACTGCCGCTATTGCTGCTGCTGCTAAGGCGGTGAAGAAAGTTGCGTCAACTTCATCGGTTGACGTAGGCACTATGGAAGATGGTAGCAAGAAGACGGGAATAGAGAAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGCTGGCGGATATGGCGGAAGGGATGATGGTGTCGCCGCCGAGAATGAACGCACCACCGCTGTCTGATGACTCGATGGAAAATTCTGATGGTACGGAAAGTTTATGGAGCTACTTTTGA 756 49.47 MADQKALPINESLIDQSLDHKSPSPISKPILIDPFVSSSVPTDPQIPNSKSQEQLPPPPPPPSSLPSSIISPPPPSSSSTTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALRGGDAVLNFPASIPTYPVPASNSPVDIRTAASTAAIAAAAKAVKKVASTSSVDVGTMEDGSKKTGIEKFVDEEEIFGMPGLLADMAEGMMVSPPRMNAPPLSDDSMENSDGTESLWSYF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21822340 21823109 - MELO3C005630.2.1 Cme09g01718 338578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01718 251 SMART rav1_2 86 148 IPR001471 GO:0003700|GO:0006355
Cme09g01718 251 ProSiteProfiles AP2/ERF domain profile. 86 142 IPR001471 GO:0003700|GO:0006355
Cme09g01718 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 76 251 - -
Cme09g01718 251 PANTHER ETHYLENE RESPONSE FACTOR 76 251 - -
Cme09g01718 251 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Cme09g01718 251 MobiDBLite consensus disorder prediction 227 251 - -
Cme09g01718 251 MobiDBLite consensus disorder prediction 1 86 - -
Cme09g01718 251 CDD AP2 87 144 IPR001471 GO:0003700|GO:0006355
Cme09g01718 251 Pfam AP2 domain 86 134 IPR001471 GO:0003700|GO:0006355
Cme09g01718 251 MobiDBLite consensus disorder prediction 234 251 - -
Cme09g01718 251 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Cme09g01718 251 MobiDBLite consensus disorder prediction 51 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02698 Cme-Chr6:34179875 Cme09g01718 Cme-Chr9:21822340 1.57E-48 dispersed
Cme09g01718 Cme-Chr9:21822340 Cme08g01225 Cme-Chr8:8651739 6.29E-36 dispersed
Cme09g01717 Cme-Chr9:21805168 Cme09g01718 Cme-Chr9:21822340 1.11E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41984 PF00847 AP2 9.00E-11 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01718 - - csv:101204373 362.073