Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01730 ATGGCTATGATCTCTAGTATTTGTTTTCTCTTTTTTCTTTCTCTTCTTTCTTTCTTTTCCCACACCCATGCAGCTACTTTTCAAATCCGCAACAACTGCCCCTTCGCTGTTTGGGCTGCTGCAGTACCCGGTGGCGGACGACGACTTAATCAGAACGATGTTTGGACACTTAACGTGAATCCCGGCACTGTTGCTGCTCGTATTTGGGCTCGAACTAACTGCAACTTCGACGGTTCGGGCCGTGGTAGATGTCAGACCGGCGATTGTGGTGGCCTCCTCCAATGCCAAGCTTACGGCACTCCGCCGAATACCCTTGCCGAATATGCGTTGAACCAATTCAATAACTTAGACTTCTTTGATATCTCTTTCGTTGATGGGTTTAACGTCCCTATGGAGTTCAGCCCAACTTCTAGCGGATGCACTCGTGGCATCAGGTGCACCGCGGACATCAACGGGCAGTGCCCTAACGAGCTTAGGGCTCCTGGAGGGTGCAACAACCCGTGTACTGTGTTCGGCGGGGATCGATACTGCTGTACGGCCCCGAACAGCAGCTGTGGACCGACGGATTACTCAAGGTTCTTCAAGGATAGGTGTCCAGATGCATATAGTTACCCAAAAGATGATGCAACCAGCACATTCACTTGCCCTGGAGGAACCAACTATAGGGTTGTTTTCTGCCCTTAG 684 50.73 MAMISSICFLFFLSLLSFFSHTHAATFQIRNNCPFAVWAAAVPGGGRRLNQNDVWTLNVNPGTVAARIWARTNCNFDGSGRGRCQTGDCGGLLQCQAYGTPPNTLAEYALNQFNNLDFFDISFVDGFNVPMEFSPTSSGCTRGIRCTADINGQCPNELRAPGGCNNPCTVFGGDRYCCTAPNSSCGPTDYSRFFKDRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21889717 21890793 + MELO3C005642.2.1 Cme09g01730 338590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01730 227 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cme09g01730 227 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Cme09g01730 227 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Cme09g01730 227 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Cme09g01730 227 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Cme09g01730 227 PRINTS Pathogenesis-related protein signature 217 226 IPR001938 -
Cme09g01730 227 ProSiteProfiles Thaumatin family profile. 24 227 IPR001938 -
Cme09g01730 227 PIRSF PR5 1 227 IPR001938 -
Cme09g01730 227 PANTHER THAUMATIN-LIKE PROTEIN 7 227 - -
Cme09g01730 227 Pfam Thaumatin family 31 227 IPR001938 -
Cme09g01730 227 PANTHER OS03G0233200 PROTEIN 7 227 IPR001938 -
Cme09g01730 227 Gene3D Thaumatin 25 227 IPR037176 -
Cme09g01730 227 SUPERFAMILY Osmotin, thaumatin-like protein 24 227 IPR037176 -
Cme09g01730 227 SMART tha2 27 227 IPR001938 -
Cme09g01730 227 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01730 - - - csv:101202921 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01416 Cme-Chr8:12362053 Cme09g01730 Cme-Chr9:21889717 6.26E-95 dispersed
Cme09g01730 Cme-Chr9:21889717 Cme06g02378 Cme-Chr6:30996366 2.60E-51 dispersed
Cme09g01729 Cme-Chr9:21886385 Cme09g01730 Cme-Chr9:21889717 1.14E-136 tandem
Cme09g01730 Cme-Chr9:21889717 Cme09g01731 Cme-Chr9:21894879 2.59E-125 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g386 . . . . . . . . . . . Cma15g01208 . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01194 . . . . . . . . . . . Cmo15g01273 . . . . . . . . . . . . . . . . . . . . Lsi09g00292 . . Cme09g01730
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92