Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01747 ATGGAATCTTTTACTTCTCTTGTGGTGTTACTCTGTTTAATTTTGGGGGTTCTTTTTGAGGCTTGTGATTCTATTTCTTCCAATGAAGTCATGGCTCTTGGGGCCTTCAGGTCAGAAGTATTTGAAGATCCATATCAAGTCTTCTCCAACTGGAACAGCCTTCAACCAGATCCTTGCTTATGGTCTGGCATTTCATGTTCTCCAACTAGAGACCATGTTATCAAGATTAACATTTCATATTCTGCAATAAAAGGGTTTCTTTCCGGAGATTTGGGTCAACTCAGCTTCTTGGAAGAATTAATTTTGCATGGGAATAAGCTGCATGGTCCAGTTCCCAAGGAGTTAGGCTACTTAAAAAACCTCAGAATCTTGGACTTAGGGATGAATCAATTCACAGGTCCAATTCCTTCAGAATTTGGGAATTTAACCAAACTTGTGAAAATAAACCTACAGTCTAATGAGTTCACTGGTAAGCTGCCTCCTGAGTTGGGAAGTTTGAGATACCTTGAGGAACTAAGGCTGGATAGAAATAAGCTTGGAGGAACTGTTGGCCATTCAGATCATACAGGACTGTATGCGACAAAAACGAACTTGACTGGGTTCTGTGGCTCATCTCAGCTAAGAGTTGCTGACTTTTCGTATAACTTCTTTGTTGGGAGCATACCGAAGTGTTTGGAGCATCTTCCAGGGTCAAGTTTCCAAGGGAATTGCCTCCATAAAATTAAGTCCAAACAACGTCCTTCAGCACAATGTGTACCTGCTGTGACTAAGAGCCATCCGGGAAGCAATGGGCAGAACCATCATCAAACAACGTCAAAACCTATCTGGCTTTTGGCCCTTGAGATAGTAACAGGAACTCTGGTGGGTTCTCTCTTCCTTGTTGCTGTTCTCACTGCAGTCCAGAAGTTCAATCGAAAATCCTCCATGATATTGCCATGGAAGAAAGCTGGAAGTAGGAAGTACTACTCTCCAGTATATGTAGATCCTGAGATTTTAAAGGATGTAACGAGATTTAGCCGACAAGAACTTGAATTAGCTTGTGAAGACTTCAGCAACATAATTGGCTCCTCTCGAGACAGTTTGGTATACAAGGGCACCTTGAAAACTGGACCTGAGATCGCGGTTATCTCAATGAGCATGAAAGAAGAGCAATGGACAGGATATCTTGAACTCTATTTTCAGACAGAGGTGGCAGATTTGTCACGAATCAACCATGAGAATACAGGGAAATTACTGGGTTATTGCAGAGAGAGTACTCCATTTACAAGGATGCTATTTTTTTCATTTGTTCTTGATGTTTACTTCTTTGCAATGACTGCAGATGGAGAAGCATGTCAGTTATCTTGGACGAGACGCATGAAGATTATTTTAGGCATCGCGCGGGGACTTAAGTATCTTCACACAGAACTCCAACCTCCGTTCACCATATCTGAGCTGAATTCCAATGCTGTATATCTCACAGATGATTTTTTTCCGAAGTTAATAGATTTTGAAAGTTGGAAGACCATTCTTTCACGATCGGAAAAGAACTCGGGATCTATAGCCAGCCAAGGTGCAATATGTGTTCTTCCAAACTCTCTAGAAGCACGACATCTCGACGTGCAAGGTAACATCTACGCGTTTGGTGTCCTTCTACTCGAAATAATCAGTGGGAGGCCTCTGTACTGCAAAGACAAAGGAAACTTAGTAGATTGGGCCAAGGACTATATCGAAATGCCAGAAGTGATGTCGTACATAGTTGATCCCGAACTGAAGCATTTTAGATATGAAGACCTTGAGGTAATATGCGAGGTGGCAAACCTTTGCATCCGTCAGCAGCCAACAAAACCGGTATCAATGAAGGAGCTCTGTACCATGTTGGAAACTAGAATTGATACCTCTGTTGCCATTGAGTTTAAGGCTTCTTCTTTGGCATGGGCAGAGCTTGCACTCTCATAG 1938 42.21 MESFTSLVVLLCLILGVLFEACDSISSNEVMALGAFRSEVFEDPYQVFSNWNSLQPDPCLWSGISCSPTRDHVIKINISYSAIKGFLSGDLGQLSFLEELILHGNKLHGPVPKELGYLKNLRILDLGMNQFTGPIPSEFGNLTKLVKINLQSNEFTGKLPPELGSLRYLEELRLDRNKLGGTVGHSDHTGLYATKTNLTGFCGSSQLRVADFSYNFFVGSIPKCLEHLPGSSFQGNCLHKIKSKQRPSAQCVPAVTKSHPGSNGQNHHQTTSKPIWLLALEIVTGTLVGSLFLVAVLTAVQKFNRKSSMILPWKKAGSRKYYSPVYVDPEILKDVTRFSRQELELACEDFSNIIGSSRDSLVYKGTLKTGPEIAVISMSMKEEQWTGYLELYFQTEVADLSRINHENTGKLLGYCRESTPFTRMLFFSFVLDVYFFAMTADGEACQLSWTRRMKIILGIARGLKYLHTELQPPFTISELNSNAVYLTDDFFPKLIDFESWKTILSRSEKNSGSIASQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKDKGNLVDWAKDYIEMPEVMSYIVDPELKHFRYEDLEVICEVANLCIRQQPTKPVSMKELCTMLETRIDTSVAIEFKASSLAWAELALS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21987251 21991965 + MELO3C005660.2.1 Cme09g01747 338607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01747 645 SUPERFAMILY L domain-like 28 229 - -
Cme09g01747 645 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 645 - -
Cme09g01747 645 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Cme09g01747 645 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cme09g01747 645 Gene3D Ribonuclease Inhibitor 141 272 IPR032675 -
Cme09g01747 645 Gene3D Phosphorylase Kinase; domain 1 327 429 - -
Cme09g01747 645 PANTHER PROTEIN MALE DISCOVERER 2 7 645 - -
Cme09g01747 645 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Cme09g01747 645 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01747 645 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cme09g01747 645 Gene3D Transferase(Phosphotransferase) domain 1 437 635 - -
Cme09g01747 645 Pfam Protein tyrosine and serine/threonine kinase 351 616 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01747 - - - csv:101221772 1205.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme07g01624 Cme09g01747 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01624 Cme-Chr7:22018419 Cme09g01747 Cme-Chr9:21987251 0 dispersed
Cme09g01747 Cme-Chr9:21987251 Cme10g01445 Cme-Chr10:17621804 7.63E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65172 PF07714 PK_Tyr_Ser-Thr 1.00E-10 CL0016 Cme PK