Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01752 ATGTTGAAGCTACCGCGGCGCAAACGATCGCCGGCGGCAGCAACGGAGGAGATTACGAAAAATGCAACGGCTATTAACGACGACGAGGCCACGGTGGCGGCGAAGGCGGTGGTACGCGTTAGCGGCATGAGTTGCTCTGCTTGCGCTGTTTCTGTTGAGAATTCCATCAAACACCTTCCAGGCATTCTCGATGCTGCCGTCGATTTCTTGAACGATAGGGCTCAAATCCACTATCTTCCTAATCTCACCGACGCAGAGACAATACTTAAAGCAATTGAAAATGCTGGATTTCAAGCTACAATATCGAAGGACGGGACCGATCATCGATCGAGAGAAGTATGTCGAATCCGAGTTAATGGAATGGGCTGCAATTCTTGCTCTTCCATGGTAGAATCAGTTTTGGAAGCAATGTATGGAGTACAAAAGACTCACATTGTTTTGTTGAAAGAGGAAGCAGAAGTTCATTATGATCCAAAGGTTGTTAATTGCAATCAGTTCATTATAGCCATAGAAGATATTGGATTTGAAGCCTTACCTATAACCATTGGCGAATACATTACCAAGATTGACCTAAAGATTGATGGTATGCACAATGAAAACTCAACAGCAAAAGTTAAGGAGTCACTCAAATTGATCCCGGGAATTGACGATGTCAATGTCGATACGACATTAAGCAAAGTTACCATATCATATAGGCCTGATATAATAGGACCTAGAACTTTCATTGAAATACTTGAGTCAATCAAATCCGAGCATTTCAAAGCAACGATATATCCCGAAGATACGGAACGAGAAACTCGTAAGGAGAAAGAAATTAAACAACATTATAAATACCTTATATGGAGTTCCGCTCTTTCTATACCTGTTTTCTTAACTTCTATGGTGTTCATGTATATACCTGGAATCAAACAGACTTTAGATATCAAAGTTGTCAATATGATGAATGTCGGACATATTATCAGATGGAATTTATCAACTCCGGTGCAGTTCGTCGTAGGTTCGAGATTCTACTTTGGATCGTACAAAGCATTGCGTCGAGGTTCTGCCAACATGGATGTATTGGTTACTTTAGGAACAAATGCAGCTTATTTCTATTCTGTTTATGTAGTTTTAAGATCAGCTACATCTCCTACTTTCAATGGTACTGATTTCTTTGAAACCAGTTCAATGTTAATTACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTAGCAAAAGGAAAGACCTCAGATGCTATTGCCAAGCTTAAACACTTGGCTCCAGAGACGGCGACAATCTTGACTTTAGATCGCCATGGAAACGTGATCAATGAAGCGGAAATCAGTAGTGAGTTGATCCAAAAGAATGATGTTATTAAGATTACACCAGGTGCGAGAGTAGCTTCTGATGGTCTTGTCGTATGGGGCGAAAGCCATGTTAACGAGAGTATGATCACAGGAGAAGCGAAACCAGTAACGAAAAGGACGGGGGACAAGGTGATAGGAGGAACTGTGAATGAAAATGGGGTATTGCATATAAAGGCAACTCATGTTGGATCAGAGAGTTCTTTAGCACAAATCGTTCGACTCGTCGAATCGTCTCAATTGGCAAAAGCTCCTATTCAAAAATTTGCTGACCATATCTCTAAGTATTTTGTGCCTTTGGTAATTTTACTTTCTTTTCTCACATGGATTGCTTGGTTTTTGGCTGGAAAGTTGCATCTCTATCCTAAATCATGGTTGCCTTCTTCAATGGACAGTTTCGAGTTGGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTCGGCCTTGCCACCCCAACCGCCATGATGGTCGGTACCGGCGTGGGTGCATCTCAAGGTGTACTAATAAAAGGAGGTCAAGCATTAGAATTTGCTCATAAGGTGAGTTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAAACTTACGAACACTACAGTACTTGAAGAACTACTTGAACTCACTGCAGCAACTGAGGTTAACAGTGAGCACCCAGTAGCCAAGGCCATTGTTGAATATGCCAAACAATTCAAGAAAGAACAAAATCCAATTTGGCCAGAAGCTCAGGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCATAGTAAAAAACAAGAAAATAACAGTTGGAAACAAGAGCTTGATGATGAACAATGACATCGAAATCCCAAGGGAAGCGGAAATGTTCCTTGTCGATGCCGAAGGTATGGCGCAAACTGCGGTTTTAGTGGCGATAGATCGAATGGTGTCAGGAGTTATTGCAGTGTCGGATCCGTTGAAGCCGGGTACCAAAGAAGTTATCTCCATTCTCAAGGCTATGGAAGTGAAGAGCATCATGATAACAGGTGACAACTGGGGCACTGCAAATTCCATTGCTAAAGAAGTTGGAATTGAAACAATCATTGCTGAGGCTAAGCCTCAGCAAAAAGCAGAGGAAGTGAAGAAGCTTCAGACTGCGGGACACACGGTGGCAATGGTCGGAGACGGGATCAACGATTCGCCTGCCCTAGTTGCAGCAGATGTCGGGATGGCAATCGGAGCCGGCACTGACATTGCAATTGAGGCAGCAGACATCGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGAAAAACCTTTGCTAAAATTCGTTTGAATTACATTTGGGCTTTAGGTTATAATCTTCTTGCCATACCGATCGCGGCAGGCGTCTTGTTCCCTTCGACTCGGTTTCGGCTACCGCCCTGGATCGCTGGAGCTGCCATGGCAGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACAAAAGACTTAAGAAGCTTGATGAGATTGAGATTCAAATGAGTGGAATAGTGGTTGACTGA 2922 42.44 MLKLPRRKRSPAAATEEITKNATAINDDEATVAAKAVVRVSGMSCSACAVSVENSIKHLPGILDAAVDFLNDRAQIHYLPNLTDAETILKAIENAGFQATISKDGTDHRSREVCRIRVNGMGCNSCSSMVESVLEAMYGVQKTHIVLLKEEAEVHYDPKVVNCNQFIIAIEDIGFEALPITIGEYITKIDLKIDGMHNENSTAKVKESLKLIPGIDDVNVDTTLSKVTISYRPDIIGPRTFIEILESIKSEHFKATIYPEDTERETRKEKEIKQHYKYLIWSSALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFVVGSRFYFGSYKALRRGSANMDVLVTLGTNAAYFYSVYVVLRSATSPTFNGTDFFETSSMLITFILLGKYLEVLAKGKTSDAIAKLKHLAPETATILTLDRHGNVINEAEISSELIQKNDVIKITPGARVASDGLVVWGESHVNESMITGEAKPVTKRTGDKVIGGTVNENGVLHIKATHVGSESSLAQIVRLVESSQLAKAPIQKFADHISKYFVPLVILLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAMMVGTGVGASQGVLIKGGQALEFAHKVSCIVFDKTGTLTIGKPVVVNVKLTNTTVLEELLELTAATEVNSEHPVAKAIVEYAKQFKKEQNPIWPEAQEFISIPGHGVEAIVKNKKITVGNKSLMMNNDIEIPREAEMFLVDAEGMAQTAVLVAIDRMVSGVIAVSDPLKPGTKEVISILKAMEVKSIMITGDNWGTANSIAKEVGIETIIAEAKPQQKAEEVKKLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRKTFAKIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRLKKLDEIEIQMSGIVVD 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22014667 22020617 + MELO3C005665.2.1 Cme09g01752 338612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01752 973 SFLD C1.7: P-type atpase like 620 894 - -
Cme09g01752 973 Gene3D - 406 528 - -
Cme09g01752 973 ProSitePatterns Heavy-metal-associated domain. 118 148 IPR017969 GO:0046872
Cme09g01752 973 Gene3D - 605 899 IPR023214 -
Cme09g01752 973 SUPERFAMILY HAD-like 637 948 IPR036412 -
Cme09g01752 973 CDD P-type_ATPase_Cu-like 279 938 - -
Cme09g01752 973 Gene3D - 645 722 IPR023299 GO:0000166
Cme09g01752 973 Gene3D - 723 773 IPR023299 GO:0000166
Cme09g01752 973 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 391 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g01752 973 SUPERFAMILY HMA, heavy metal-associated domain 186 250 IPR036163 GO:0046872
Cme09g01752 973 SUPERFAMILY Calcium ATPase, transmembrane domain M 386 913 IPR023298 -
Cme09g01752 973 PANTHER ATP7, ISOFORM B 21 960 - -
Cme09g01752 973 CDD HMA 116 177 IPR006121 GO:0046872
Cme09g01752 973 TIGRFAM TIGR00003: copper ion binding protein 116 177 IPR006122 GO:0005507
Cme09g01752 973 Pfam E1-E2 ATPase 419 616 - -
Cme09g01752 973 Pfam Heavy-metal-associated domain 37 97 IPR006121 GO:0046872
Cme09g01752 973 Pfam Heavy-metal-associated domain 191 248 IPR006121 GO:0046872
Cme09g01752 973 Pfam Heavy-metal-associated domain 116 176 IPR006121 GO:0046872
Cme09g01752 973 SUPERFAMILY HMA, heavy metal-associated domain 112 183 IPR036163 GO:0046872
Cme09g01752 973 Gene3D - 111 179 - -
Cme09g01752 973 PRINTS H+-transporting ATPase (proton pump) signature 842 858 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g01752 973 PRINTS H+-transporting ATPase (proton pump) signature 873 898 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g01752 973 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Cme09g01752 973 PRINTS P-type cation-transporting ATPase superfamily signature 638 652 - -
Cme09g01752 973 PRINTS P-type cation-transporting ATPase superfamily signature 767 778 - -
Cme09g01752 973 PRINTS P-type cation-transporting ATPase superfamily signature 789 799 - -
Cme09g01752 973 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Cme09g01752 973 PRINTS P-type cation-transporting ATPase superfamily signature 865 877 - -
Cme09g01752 973 Gene3D - 186 275 - -
Cme09g01752 973 CDD HMA 37 100 IPR006121 GO:0046872
Cme09g01752 973 ProSiteProfiles Heavy-metal-associated domain profile. 113 179 IPR006121 GO:0046872
Cme09g01752 973 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 351 951 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cme09g01752 973 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 21 960 - -
Cme09g01752 973 Gene3D - 33 103 - -
Cme09g01752 973 CDD HMA 190 256 IPR006121 GO:0046872
Cme09g01752 973 SUPERFAMILY Calcium ATPase, transduction domain A 439 524 IPR008250 -
Cme09g01752 973 SFLD p-type atpase 620 894 IPR044492 -
Cme09g01752 973 ProSiteProfiles Heavy-metal-associated domain profile. 35 101 IPR006121 GO:0046872
Cme09g01752 973 Pfam haloacid dehalogenase-like hydrolase 635 856 - -
Cme09g01752 973 SUPERFAMILY HMA, heavy metal-associated domain 35 103 IPR036163 GO:0046872
Cme09g01752 973 ProSitePatterns E1-E2 ATPases phosphorylation site. 640 646 IPR018303 -
Cme09g01752 973 ProSiteProfiles Heavy-metal-associated domain profile. 188 257 IPR006121 GO:0046872
Cme09g01752 973 ProSitePatterns Heavy-metal-associated domain. 40 69 IPR017969 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01332 Cme-Chr5:22206927 Cme09g01752 Cme-Chr9:22014667 2.82E-75 dispersed
Cme07g00175 Cme-Chr7:1156688 Cme09g01752 Cme-Chr9:22014667 8.46E-113 dispersed
Cme08g01961 Cme-Chr8:24343751 Cme09g01752 Cme-Chr9:22014667 0 dispersed
Cme09g01752 Cme-Chr9:22014667 Cme11g00342 Cme-Chr11:3550683 0 dispersed
Cme09g01752 Cme-Chr9:22014667 Cme05g01855 Cme-Chr5:27319766 2.72E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01752 K17686 - csv:101220448 1764.97