Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01757 ATGGGGAAAGGAAGACCAAGAGCTGTGGAAAAGGGGGTAATAGGGCAGAATTTGAGTGTATGTTCATCAACTTCATTGAACATACCATCTGGGCCTGTGTATCATCCAACTGAAGATGAATTTAGAGACCCATTGGAGTATATATATAAGATCAGACCCGAGGCTGAGCCGTATGGGATTTGTAGGATAGTGCCTCCCAAGAACTGGAAACCTCCATTTGCATTGAAATTAGATTCTTTTACATTTCCCACAAAAACACAGGCCATTCATCAATTGCAGGTTAGACCTGCTGCCTGTGATTCAGAGACTTTTGAGCTTGAATATAATAGGTTTTTGGATGATCATTTTGGAAAAAAGATGAAGAAGAAGGTGGTTTTTGAGGGAGAGGAGTTGGATTTGTGCAAGTTATTTAATGCAGCGAAGCGTTATGGTGGGTATGATAAAGTTGTTAAGGAGAAGAGGTGGGGTGAGGTTTTTAGGTTTGTTAGATCAACAAAGAAGATTTCGGAATGTGCTAAGCATGTGCTGTGTCAATTATACCGGGAACATCTATACGATTACGAGAATTATTATAATAAATTGAATAAGGATGTCACGAAGGGTTCAAAAAGGAAAATACAAGACGAGAAGCTCAGTGAATGCTTGGCCGAATTTTCAACATCTAAAAGGAGGCGGCAGAACACTGACGATGGCAGAGCCAGCATCTCAAAGTTAAAAGAAGAAGAGAATAATGATCAGATTTGCGAGCAATGTAAAAGTGGGTTGCATGGTGAAGTGATGCTTCTATGCGATAGGTGTGACAAGGGGTGGCACATATATTGTCTCTCACCTCCCTTGAAGCAAGTCCCACCTGGGAACTGGTACTGTTTAGATTGCTTGAATTCCGAGAAGGACAGTTTTGGATTTGTCCCTGGCAAATGTTTCTCCCTGGAAGCATTTAAGCGTATGGATTATAGGGCCAAGAAGAAATGGTTTGGCTCAGGGTCTGCTTCTAGAATGCAAATCGAGAAGAAATTTTGGGAAATTGTGGAAGGTTCATTTGGTGAAGTTGAAGTTAAATATGGCAGTGACTTGGACACATCGATTTATGGCAGTGGCTTTCCTCGTGAAAATGTTCAGAGACCAGAATCAATTGATGCTAAGGCTTGGGATGAATATTGCAATAGTCCGTGGAATCTCAATAACTTGCCCAAATTGAAAGGGTCCATGCTTAGAGCCATTCGTCACAATATTACTGGTGTTATGGTTCCCTGGTTGTATATTGGAATGCTATTTTCATCGTTCTGCTGGCATTTTGAAGATCATTGTTTCTATTCAATGAATTACCTACACTGGGGTGACCCAAAATGCTGGTATAGTGTACCTGGTAGTGAAGCTACTGCTTTTGAGAAGGTTATGCGGAACAGCCTTCCTGATCTTTTTGATGCACAACCTGATTTACTTTTTCAACTTGTTACCATGTTGAATCCATCCGTCTTGCAACAAAATGGCGTACCCGTTTATACAGTACAGCAGGAGCCTGGAAATTTTGTTGTGACCTTCCCTAGATCTTTCCATGGGGGTTTTAATCTTGGATTAAATTGTGCTGAGGCCGTAAATTTTGCTCCTGCTGATTGGATGCCTTATGGTGGGTTTGGAGAAGAGTTGTATCAGCTTTATCACAAACCTGCTGTTTTTTCTCACGAGGAGCTTATCTGTGTGATAGCAAAGACGGACTGCAGTGACCGAGTGTCTCCTTACCTAAAGAAAGAGCTACTTAGGATTTATTCTAAGGAGAAAAGTTGGAGGGAACAACTTTGGAAAAATGGTGTAATAAGATCTTCTCCATTGCCTTCTCGAAAGTGTCCTGAATATATTAGTACGGAGGAGGATCCAACATGCGTTATATGTAAGAAGTACCTTTATCTTTCAGCTATAAGTTGCCGCTGTAGGAGATCTGCTTTTGTATGTTTGGAGCACTGGCAACACCTTTGTGAATGCAAGTACAGCAGGCGGCGTCTTTTGTATCGTTATACACTCGCTGAACTATATGATTTGATTGGTATAATTGATAGATGTGGTTCTGGGGATACAACAAAAAGTAAGGATTTTCGACAAGCAGGCTTATGCTACACTGAACGATGTACTTTGACAAAAAAGGTGAAAGGTGGTCGTGTCACTCTGTCTCAACTTGCAGAAAAATGGTTACTGCATTCAAAAAAGGTTCTTCAAGATCCATTCTCAAATGAGGCATGTGTTAAGGCTTTGAGAGAAGCCGAGCAATTTCTTTGGGCTGGTCATGAAATGGATCACGTCCGTGATGTTGTAAGAAACTTGGATGAAACTCAAAAGTGGGTTCAAGGCATTGGAGATTCCCTTTCTAAAATCGAAGCGTGGTCATGTGATCATTCTGGAAGTTCTGAGAAAATTTGCTTGGATCATGATCATGTTGAAGAAGCAAAGATTTTGATACAAGATATTGATAACGCCTTATCAACATGCCCCGATTTTCATCTTGTAATCGGATATGATGAGGGTGCTATGAGGTCTTGCATAGAAAGTGTCAGAGAAATTTTGGAAAAACAGCCTACTGCTCTTGAGCTTGAGGTTCTTTACAAGTTGAAGTCTAAGATCTTGGAACTCGGAATCCAGCTTCCGGAGACAGAAATGGTGCTGGATTTAACAAGGCAAGCTGAACTACATCGTTCTAGATGTGCAGAAATTATTAATGGTCCCATGAACTTGAAGACTGTCGAACTATTCCTTCAAGAATCTAACGGTTTTGCTGTTAATATACCTGAACTGAAACTAATAAGACAGTATCATGATGATGTTGTCAAATGGCATGCTCGTCTTAATGCTGTTCTGGTTAATGTTCATGAACGGGAGGATCAACATACTGTAATAGAAGAATTAAATTGCATCCTGAGAGATGGATTATCATTGACAATAAAAGTTATGTTTCCTCGTGACTCGACTTTGATGCAGTTACAGGTTACCAAGGTTACCATGGAATTCCTACAGAAATTGATGAATGAGGCTGTAGAGTTAGAAATTGATAAGGAAAAATTGTTTGCTGATATTCGTGGAGTTCTCGATTCAGCAATGAGTTGGGAAAAGAGAGCTATGAATTTTCTAGCGCATGGGGCTGAGTTATCTGATTTTGAAGAGATTATAAGGTCTTCTGAAGGTTTATGTGTTATTCTACCTTCGCTTCATGATGTCAAGAATGAAGTATCCCTGGCCAAGTCTTGGCTAAATATTTCAAAACCTTTCTTAGAGTCTGTTCTCCCTTCGCCATCTGCACCAAGATCGCAGCTCAACATTGAAACACTAAAGGAGTTGGTTTCTCAGTCAAAATTCCATAAGGTCGCTTTGGAAGAAAGCAGAGTGCTTGCTGCGGTCCTGAGAAAATGCGAGGATTGGAAAGATGGAGCAAACTCTTTATTGCAAGAAATTGATAATCTTTGGAATGTGGATGATATAGGGGATGGACTGAGCAATTGTCTTATTCTTAAGATTAAACAATTAGTTGATAGAATCAATGCTATTATTACAGCCGGTATATCTCTTGGTTATGACTTCTGTGAGATTTCCCGACTTCAAAGTGCTTGTTCTACACTCATGTGGTGCAATAAAGTTCTTTCTCTTTGCGATGCTATTCCTTCTTATCAGGATGTTGAGAGCTTGATGAAGGTTGAAGAGGATACTTCTTGTTTTTTTGTCTCTGGTGTTTTGTGGAGCTTATTGCTGGAAGGCGTCAAATGGCTGAAACAAGCCTTAGAGGTGATTCCTGGAACGTGCAATTCTAAACAAAGAAAGTTGAGCGATGCTGAGGAATTGCTTTCCAACTCTGAGAGGTTTGAATGTCTTCTACTTGCAGAGCATCAGAATCAACTTCTCAGCCATGAAAGGTCAACTTGTAAATGCTATTCAGAAGCACAAAAATTAACCCAAATTGGTGAAACTGCACTGCGTGAAGAAGTACGCCAATTTTTCATTATGGAGCGTGCTGAACGGTCGTGGGCTCTGTTATTAAAACTTAAGGAAGAAGGAGACATTGTTGCCTTCAATTGTTCAGAGCGAAATTTAATCTTTTCCGAAGCTGAAAAGATTGAAAGGTGGAAGAAACAAATGGAGGAAATCATGAAGACGTCTTTTGGGGATGGAAATTCTCTGCTCGGTTGTCTAGGAGAGATAAAGAAATCACTGGATAGAGCCCTATACATATATGAGAAACCGTTGCTCTACGCCGGTCAGAACTTATGTGTTTGTTGCTCTAGCGGTTCACAGGACCAGCATCTTTTTGCTTGCTCAGTATGTGAAGAAAGCTCGAGGGGTGCACTATCAATTGATAAAAGTGGAGGTCCCTTGAGATATTTAGCAAATCGTCCTGAACTAGAAATGCTCACTAAGCTTAATTCTGATGCTGTGAACTTCTGTGTCTGGGAAAGCCCCAAATGCCTAAAGGAAGTTGGATATCTTCCTAAATTGATGCTCAGACAAAACTTAATTGAGATATTCCGCAATGTAGACTTGAATGTTGAATTGTTGGAAGAGGAGGATGTATTAAAGCAACTGATAGAGCAGGCTTTAGTATGCAAATCTCACTTGGCAGAAGCCTTGGACTTCTCATCACGTTGTAATGATAAAGATTTTAGTGTTGCTTGCAAGAGTTCACTGTCACAGGCTATGGACGTTGCAGGCATTAACGATCATGAAGGTAAGCGTGGCCTTGAAATGGAACTATTGAGGAACTCGTGGAGATTTAGAGTCAAGGAAGCTCTTGAAGGTTCTGAAAAACCAACAATGCAACAGGTCCTGGAGCTTCTCGAAGAGGGATCTGTGATAAGCATTCTGCCGGAAGATTGCTACAGACGGAAGCTTTCGGAAGTGAAGATTGTTTGCTCAAAGTGGAGAAGTCTTGCAAGGAAGATTTCAGCCGACTGTGGGGCCCTTGAATTGGAGAAAGTTTTTGAATTGATCGAAGAGGGTGAAAATTTACCTGCATACCTTGAGAGGGAGCTCAAGTTATTAAGAAATCGAAGTATGCTTTATTGCATTTGCCGCAAGCCAAATGATCGCAGGCCAATGCTTGCTTGTGATATTTGTGAAGAATGGTATCACTTTGATTGTGTCAAGATAAAGTCTACTCCCAAGGTATACATTTGCCCTGCTTGCAAACCGCAAGTTGACAATAAAATGTTGATTCAGCTATCTACGGAATATGAAAGTGAAACTGGTGCAAAATTCGTGGAGCCAAAGACCCCTTCTCCTCAACACACGAAGCGGAGATCGAAACCGAAGAAAACAAAGCGAAACTTAGTTCGAAGTGTGACGGATTGCTATAGAGAATTCAGGTCCTCAAGTGGAATGGAATGCTTATGGTGGCAAAATAGGAAGCCTTTTAGGAGAGTAACCAGAAGGAGAGCAGAATTTGGAAGTCTTTCTCCATTTTCCCTCATAAAACAATAA 5454 40.7 MGKGRPRAVEKGVIGQNLSVCSSTSLNIPSGPVYHPTEDEFRDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALKLDSFTFPTKTQAIHQLQVRPAACDSETFELEYNRFLDDHFGKKMKKKVVFEGEELDLCKLFNAAKRYGGYDKVVKEKRWGEVFRFVRSTKKISECAKHVLCQLYREHLYDYENYYNKLNKDVTKGSKRKIQDEKLSECLAEFSTSKRRRQNTDDGRASISKLKEEENNDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQVPPGNWYCLDCLNSEKDSFGFVPGKCFSLEAFKRMDYRAKKKWFGSGSASRMQIEKKFWEIVEGSFGEVEVKYGSDLDTSIYGSGFPRENVQRPESIDAKAWDEYCNSPWNLNNLPKLKGSMLRAIRHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGDPKCWYSVPGSEATAFEKVMRNSLPDLFDAQPDLLFQLVTMLNPSVLQQNGVPVYTVQQEPGNFVVTFPRSFHGGFNLGLNCAEAVNFAPADWMPYGGFGEELYQLYHKPAVFSHEELICVIAKTDCSDRVSPYLKKELLRIYSKEKSWREQLWKNGVIRSSPLPSRKCPEYISTEEDPTCVICKKYLYLSAISCRCRRSAFVCLEHWQHLCECKYSRRRLLYRYTLAELYDLIGIIDRCGSGDTTKSKDFRQAGLCYTERCTLTKKVKGGRVTLSQLAEKWLLHSKKVLQDPFSNEACVKALREAEQFLWAGHEMDHVRDVVRNLDETQKWVQGIGDSLSKIEAWSCDHSGSSEKICLDHDHVEEAKILIQDIDNALSTCPDFHLVIGYDEGAMRSCIESVREILEKQPTALELEVLYKLKSKILELGIQLPETEMVLDLTRQAELHRSRCAEIINGPMNLKTVELFLQESNGFAVNIPELKLIRQYHDDVVKWHARLNAVLVNVHEREDQHTVIEELNCILRDGLSLTIKVMFPRDSTLMQLQVTKVTMEFLQKLMNEAVELEIDKEKLFADIRGVLDSAMSWEKRAMNFLAHGAELSDFEEIIRSSEGLCVILPSLHDVKNEVSLAKSWLNISKPFLESVLPSPSAPRSQLNIETLKELVSQSKFHKVALEESRVLAAVLRKCEDWKDGANSLLQEIDNLWNVDDIGDGLSNCLILKIKQLVDRINAIITAGISLGYDFCEISRLQSACSTLMWCNKVLSLCDAIPSYQDVESLMKVEEDTSCFFVSGVLWSLLLEGVKWLKQALEVIPGTCNSKQRKLSDAEELLSNSERFECLLLAEHQNQLLSHERSTCKCYSEAQKLTQIGETALREEVRQFFIMERAERSWALLLKLKEEGDIVAFNCSERNLIFSEAEKIERWKKQMEEIMKTSFGDGNSLLGCLGEIKKSLDRALYIYEKPLLYAGQNLCVCCSSGSQDQHLFACSVCEESSRGALSIDKSGGPLRYLANRPELEMLTKLNSDAVNFCVWESPKCLKEVGYLPKLMLRQNLIEIFRNVDLNVELLEEEDVLKQLIEQALVCKSHLAEALDFSSRCNDKDFSVACKSSLSQAMDVAGINDHEGKRGLEMELLRNSWRFRVKEALEGSEKPTMQQVLELLEEGSVISILPEDCYRRKLSEVKIVCSKWRSLARKISADCGALELEKVFELIEEGENLPAYLERELKLLRNRSMLYCICRKPNDRRPMLACDICEEWYHFDCVKIKSTPKVYICPACKPQVDNKMLIQLSTEYESETGAKFVEPKTPSPQHTKRRSKPKKTKRNLVRSVTDCYREFRSSSGMECLWWQNRKPFRRVTRRRAEFGSLSPFSLIKQ 1817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22043311 22063435 - MELO3C005670.2.1 Cme09g01757 338617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01757 1817 Pfam PLU-1-like protein 853 1143 IPR013637 -
Cme09g01757 1817 SUPERFAMILY FYVE/PHD zinc finger 1674 1726 IPR011011 -
Cme09g01757 1817 Pfam jmjN domain 32 65 IPR003349 -
Cme09g01757 1817 Gene3D Cupin 13 535 - -
Cme09g01757 1817 SUPERFAMILY Clavaminate synthase-like 340 568 - -
Cme09g01757 1817 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Cme09g01757 1817 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Cme09g01757 1817 Coils Coil 1000 1020 - -
Cme09g01757 1817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1666 1722 IPR013083 -
Cme09g01757 1817 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Cme09g01757 1817 SUPERFAMILY ARID-like 81 197 IPR036431 GO:0003677
Cme09g01757 1817 SMART JmjN_1 30 71 IPR003349 -
Cme09g01757 1817 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Cme09g01757 1817 Pfam PHD-finger 1679 1722 IPR019787 -
Cme09g01757 1817 Pfam PHD-finger 247 294 IPR019787 -
Cme09g01757 1817 Pfam C5HC2 zinc finger 627 678 IPR004198 -
Cme09g01757 1817 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1009 - -
Cme09g01757 1817 MobiDBLite consensus disorder prediction 1741 1765 - -
Cme09g01757 1817 Pfam ARID/BRIGHT DNA binding domain 107 188 IPR001606 GO:0003677
Cme09g01757 1817 ProSitePatterns Zinc finger PHD-type signature. 1680 1720 IPR019786 -
Cme09g01757 1817 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Cme09g01757 1817 SMART cupin_9 385 551 IPR003347 -
Cme09g01757 1817 SMART ARID_2 95 188 - -
Cme09g01757 1817 SMART bright_3 99 193 IPR001606 GO:0003677
Cme09g01757 1817 SUPERFAMILY FYVE/PHD zinc finger 235 296 IPR011011 -
Cme09g01757 1817 SMART PHD_3 247 293 IPR001965 -
Cme09g01757 1817 SMART PHD_3 1679 1721 IPR001965 -
Cme09g01757 1817 CDD PHD_RSF1 248 292 - -
Cme09g01757 1817 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Cme09g01757 1817 Coils Coil 1503 1523 - -
Cme09g01757 1817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 301 IPR013083 -
Cme09g01757 1817 Gene3D - 98 201 IPR036431 GO:0003677
Cme09g01757 1817 CDD ARID 100 188 - -
Cme09g01757 1817 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 23 1009 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01757 K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] - csv:101216734 3307.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02206 Cme-Chr1:30859073 Cme09g01757 Cme-Chr9:22043311 2.65E-09 dispersed
Cme03g00578 Cme-Chr3:9074913 Cme09g01757 Cme-Chr9:22043311 5.40E-23 dispersed
Cme04g01901 Cme-Chr4:26705017 Cme09g01757 Cme-Chr9:22043311 2.61E-10 dispersed
Cme07g00083 Cme-Chr7:521716 Cme09g01757 Cme-Chr9:22043311 2.29E-06 dispersed
Cme09g01757 Cme-Chr9:22043311 Cme12g01007 Cme-Chr12:17605207 2.10E-14 dispersed
Cme11g00068 Cme-Chr11:564239 Cme09g01757 Cme-Chr9:22043311 5.02E-11 dispersed
Cme09g01757 Cme-Chr9:22043311 Cme06g02447 Cme-Chr6:31516896 1.12E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41986 PF08429 PLU-1 1.80E-23 No_clan Cme TR