Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01764 ATGTGTCAAGGAAACGGTGAAAGATTTGAGAAAATGAATAAACAGAATAAGCCTTGTGTAAGCAATCAGCCATCAATATATTATCGGTGGAGACCAGATGAGGGTATATCTTCTGAGCTGGCTGATTTTGTCCTTGAAAATGGCACCTCCAACACTTGTTATGCCAAACACAGTAAGGATGGCAGGACTATAAATAAACCCAAGTCTTCTGGGATACTGAGCACAACTCAGGTCATTTCAATTTTTGGCCAAGTATTGAATCTTGCCAGTCGTCCTTTTACCTTTTTCCGACCAAATAGGGTCTTGAACCAAGAAAATGATGATTTCGTTGAGGTTACCTTCAATAGTGTGGTTGAAGTTGATGGCAAAACAGTTACCTCACCTGAAATTAAAGACTTCTGTGTTGATTCAAGGACCGATGGCCGATGTTCTCCTCTGGTGCAGCCTACATTGGGTTTGAATTGTTTGACAGTAACTCAGAAGATTTCTTTGTTAGAACCTTGTAATTTTCATTCCATGTCATCATTTTGGAGTCTACTAAATGGTGGTAGTGACATGCCAGCTAATTCCTGGAAAGGAAAAGGCCTTACTAGTGTACGAATTTTGCATGATATGGGGAAGATATATGGATGGATGAACTGTGTAAGTCATACTGAAGCATGTTACCCTTACCCTATGAAAGTTGCTAATACTGGAAACATGGAAGCCAATGAATTCCAGGCTAGAGGTGGTCTTAATGAAGCAGGGGACTGCGCTTCAGGAGATTCAAATTTTCTTGTTCACAACTTGATTAGTGAAACTTCAAAAAATCCTCCTATGTTCCAATCAATCAATGTATCATCTCTGTTCATCCGCAAGTTGGAGATAAAAATGATTGAAAATGTTTATATGGCCTCACGTATCCTTATGTTTGTTCAAGATAATAAGGCAGATGGCAGTATTCTAGAAAGCCCCAATCCAGATATTTTGGCAGCTCATTTAGTACCTTCTAAAGATGGTGCATTAGACAATTTAGACTATGGGCAGATGACTAGTAGCAGTGAACAACGTGAGAATATAACCAAAAAGTCCGATAAGCTCATTGTCGAAAATGAGTACAACAGAGAGGATTCCTCTTTGACCCGTGAAAGATCTTGCTACAATATTGGTAAACAAGAACATGCCTTTGCCGGGGCATTAGCTGGTGTATTTGTCAGTCTTTGTCTACATCCTGTTGATACAATCAAAACAGTGTTTCAGTCTTATCATGCAGAACAGAAGTCTCTCAGTTACATTGGAAAATCAATTGTCACTGATCGAGGTTTAAGTGGACTTTATCGTGGAATCTCCACCAACATTGCTTCTTCAGCTCCGATATCTGCTGTTTACACTTTCACATATGAATCAGTTAAAGGAGCTTTGCTTCCAATTCTCCAAGAGGAGTACCGCTCTATTGTCCACTGTGTGGCTGGTGGTTGTGCAAGTATTGCTACATCTTTTCTTTTTACCCCAAGTGAGCGTATAAAACAGCAGATGCAATTCTATACATATGAAAGTTTGAAAGGTCTGATGAAATCTAATGCTCAACAAACTACTTCACAAACGTTCTTGAAAATTTATTACACAATTTCTTACCATTTAGTTTGTGGAGGAGTAGCTGGATCTACTGCCGCCTTGTTTACCACTCCTTTTGATGTTGTAAAGACCAGATTACAAACACAAATACCAGGATCTTTGAGCCCATATAAAAGTGTAATTCAAGCACTCTATGAAATAGGCAAAAAAGAAGGCCTGCAAGGTCTCTATAGGGGGTTGACTCCAAGACTAATTATGTACATGTCTCAAGGTGCAATCTTCTTCACCTCTTATGAATTTTTGAAGAGACTTTTTTCTCTTGAGGTGGCTCGACATGGTACTGCAAGAGTCCAACACCGAGTGGATGAAAAACTCGAAAGATGA 1938 39.32 MCQGNGERFEKMNKQNKPCVSNQPSIYYRWRPDEGISSELADFVLENGTSNTCYAKHSKDGRTINKPKSSGILSTTQVISIFGQVLNLASRPFTFFRPNRVLNQENDDFVEVTFNSVVEVDGKTVTSPEIKDFCVDSRTDGRCSPLVQPTLGLNCLTVTQKISLLEPCNFHSMSSFWSLLNGGSDMPANSWKGKGLTSVRILHDMGKIYGWMNCVSHTEACYPYPMKVANTGNMEANEFQARGGLNEAGDCASGDSNFLVHNLISETSKNPPMFQSINVSSLFIRKLEIKMIENVYMASRILMFVQDNKADGSILESPNPDILAAHLVPSKDGALDNLDYGQMTSSSEQRENITKKSDKLIVENEYNREDSSLTRERSCYNIGKQEHAFAGALAGVFVSLCLHPVDTIKTVFQSYHAEQKSLSYIGKSIVTDRGLSGLYRGISTNIASSAPISAVYTFTYESVKGALLPILQEEYRSIVHCVAGGCASIATSFLFTPSERIKQQMQFYTYESLKGLMKSNAQQTTSQTFLKIYYTISYHLVCGGVAGSTAALFTTPFDVVKTRLQTQIPGSLSPYKSVIQALYEIGKKEGLQGLYRGLTPRLIMYMSQGAIFFTSYEFLKRLFSLEVARHGTARVQHRVDEKLER 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22111984 22118806 - MELO3C005677.2.1 Cme09g01764 338624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01764 645 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 12 506 - -
Cme09g01764 645 Gene3D Mitochondrial carrier domain 361 506 IPR023395 -
Cme09g01764 645 Gene3D Mitochondrial carrier domain 507 637 IPR023395 -
Cme09g01764 645 ProSiteProfiles Solute carrier (Solcar) repeat profile. 534 622 IPR018108 -
Cme09g01764 645 ProSiteProfiles Solute carrier (Solcar) repeat profile. 382 466 IPR018108 -
Cme09g01764 645 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 506 - -
Cme09g01764 645 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 506 639 - -
Cme09g01764 645 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 506 639 - -
Cme09g01764 645 SUPERFAMILY Mitochondrial carrier 385 619 IPR023395 -
Cme09g01764 645 Pfam Mitochondrial carrier protein 385 467 IPR018108 -
Cme09g01764 645 Pfam Mitochondrial carrier protein 536 624 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01764 - - - csv:101216245 1157.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01764 Cme-Chr9:22111984 Cme11g00204 Cme-Chr11:2447836 1.76E-06 dispersed
Cme09g01764 Cme-Chr9:22111984 Cme04g00398 Cme-Chr4:3170600 2.97E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g321 . . . . . . . . . . Cma02g01450 . Car02g01217 . . . Cpe05g00338 . . . . . . . . . . . . . . Cone8ag0303 . . . . Csa05g00280 Chy09g01229 . . . . . Bpe08g01484 . . . . Cmo02g01486 . . . . . . . Bhi12g00262 . . . . . . Cla01g00261 Cam01g0267 Cec01g0259 Cco01g0274 Clacu01g0266 Cmu01g0255 Cre09g2252 Lsi09g00256 . . Cme09g01764
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006178 1 3 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 4 6 1 37