Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01765 ATGGTTTTTCTCATATCCATATTTAACGTTAAGTTGTCTTTAATATTAGCCAAACTGAAATTGGAGCTGGTGGAGTGGTTAAATTGTATGCTCCCCCATATAAATTTGCCACTGGATGCTTCAGACGAGGAATTGAGAGTATGCTTGAGTGATGGAAGTGTATTATGCAGCATCTTGGATAAACTATGCCCTGGTGTATGTCAGGGAGGCAATTCGAAGCCCATCACTCCTAATATCGAGAGATTTCTGATAACTCTGGATGAATTAGGACTTCCTGGCTTTGAACCTTCTGCCTTGGAGCAGGGATCTATTGCACCAGTTTTGCACTGCCTGAGCACACTTCGAGCTTCCTTTGATTTGAGTGTTGGGGATGAGTACACTCAAAATCATTCACGAAAAAGATGGAACTTATGCGAAGTAGATTCATTAGATGGAATCAATAATTTATCTGGGCAAAGATTTCAAGATTTTCAGAATGGTTCAGTTGTATCAGTGCCGTCATATGGTTTAAACAGCCATATTCAATATGAGGATTATGGGGAGCAAGAACAAATTCATGATGTTTCTGGTTCTAACGTCGTGGAGTTGATAAAATCAGAGAATCTTGAGAATGTCTCTACTGAATCACTTTTCAATATGATCAATAGAATTCTGGATGGCACTGTTGAAACAAAAAATGGAGACGTGTCACATCAAGTAGCTTATATTCTGAGAAAAGTTGTACAAGTGCTTGAGCAGAGAATTTTAACTCATGCTGGAAACCTGAAACATCAAAGCAATCTTTTGAAAGCTCGGGAGGAGAAATTTCTCTCAAAATTAAGAGTCCTTGAAACCCTTGCAACAGGAACCACGGAAGAAAATGAGGTTGTCATGAACCAGCTTCAGCGTTTGAAGATTGAAATGTTCAAGGTAGAGGAGATGAAAAACTGTGAGGAGCAGGATAAGATGGCGTTGAAGGAGCAAAAGGCACTCTGTGATGTCAAGTTATCAAACCTTAAAGATGAGCTAGAAAAAGCCAAAAGTGAACATGAAAATCATTGCTTACAACTGGAAACAAATGCTAAGGAGGAGAAAGCTAAGTATGAGGAGAAGCTAAATGAACTTGAATGCTTATTAGCTGATTCCAGGAAGCACGTTAAGGAACTTGAGACATTTTCTGAATCTAAATCACTGAAATGGAAAAAGAAAGAGTTCGTCTATCGAAATTTTGTTGATGATCTGCTTCGAGCATTTCAGGGATTAAGGATTTCAGTGGACTCCATCAAACGTGAGGTCTTGAATACAAAAGGAAACTATGCTGAGGATTTTAATTTCCTCGGAATGAAGTTCAAAGGATTAGCAGACGTGGCTCAGAATTACCATGCAGTTTTGAACGAAAATAGAAGATTGTATAATGAAGTTCAGGATTTAAAAGGCAACATTCGAGTGTATTGTCGGATACGGCCATTTCTTCCAGGACAAAGCAAGAAGCTAACTACAGTTGAATATATTGGTGAAAATGGTGAATTGGTAATTATAAATCCTGCTAAACAAGGAAAAGACAATCGTAGACTATTCAAATTCAATAAAGTTTTTGGTCCAACATGTTCACAAGAGGATGTATTTTTAGACACTCAACCATTAATTCGATCGGTCCTTGATGGATATAATGTTTGCATATTTGCTTATGGACAAACTGGTTCAGGAAAGACATATACTATGAGTGGACCTGATGTATCGTTGAGAACAGAATGGGGTGTTAACTATCGAGCATTAAATGACCTCTTTGAAATTTCTCAAAGCAGGAAAGGCTCTATTTCCTATGAAATTGGTGTCCAAATGGTTGAGATATACAATGAACAAGTCCGTGATCTGCTCTCAACTAGCGGTCTTCCAAAGAGACTTGGGATTTGGAACACCACTCAACCAAATGGGCTTGCAGTACCTGATGCTGGTATGCATCCTGTTAGATCTACTGGCGATGTCCTGGATTTGATGAAGATTGGATTGACAAACAGGGCAGTTGGAGCAACAGCCTTGAATGAAAGAAGCAGCAGATCTCATAGTGTGCTGACAATTCATGTTCGAGGTGTGGACTTGGAGACAGATGCTATTTTACGTGGTAGTCTCCATTTAATAGATCTTGCCGGCAGTGAAAGGGTGGACCGGTCAGAGGCTACTGGAGATAGGCTGAAAGAGGCACAACACATTAACAAATCATTGTCAGCTCTTGGGGATGTAATTTTTGCTCTTGCACAGAAGACTTCGCACATTCCTTACAGAAATAGCAAACTAACCCAAGTTCTCCAAAGTTCTTTAGGTGGTCAAGCGAAGACACTCATGTTTGTACAGATTAATCCTGATGTAGATTCGTACTCTGAAACAATAAGCACCTTGAAGTTTGCTGAAAGAGTTTCTGGTGTAGAGTTGGGTGCTGCCCGTAGCAACAAAGAGGGTAGATATGTTAGAGAACTCATGGATCAGGTGGCCGTTCTCAAGGATACCATTGCAAATAAAGATGAGGAGATTGAGCGGTTGCAGTTGCTTAAAACTAATGGCAATGGTGTAAAGCATGGCGTTGGTTCCCTAAGACAGGAGTCATTTTCTCCTAGAAGACACTCTAGCATAACTCCTCGGCAGAGCCAAAAGCCATCAGGGAGAAAAGGCTTAGGCATGAATAAAGCAGCATCTGACGTGGACAATTTCTCAGATTATGACAGGCGTTCTGAAGCTGGATCACTTCAGTCTATGGATGACTTTAAATATCATAAGCGTTCTGAATCTGGATCACATCTGTTTATAGAAGACTTTAGACATCATAAGCGTTCTGGATCTGGATCGCATTTGTCTGTAGAGGACTTTAGACATCAGAAGGAATCTTCTTCACAGTTAAGGGATTTAAGTCAGAATGTTACTGATGATGTTGACCTTTTAGGCTTTGGAAATGCTGATTCGGATGAGAGGTTAAGTGACATATCAGATGGGGGGCTTTCAATGGGAACTGAAACCGAGGGATCAATTTGCAGTGTCGTGGAATACACTCTATTCCCTGAAGTTCCAAAGCCATCAGATGTTTCGTTTGCTGATTCTAAGTACCCAGAGGGCACATTGGATGTGAAAAGGCAAGCAGAGAGTGCAACAACTGGGGTGAAGTCATTGATTCCTATTCCAGAAAAAACCAATGCACCATCGAAGACAGGCGCCAGGCCCCCACAAAAGCCCATGCAAGCCAAATCGTCAAGAGTTTCATTGACGAAAAGCTCCTCAAAGGCTCCAATAGCATCAAATACCAAACTTTTCATCGATAAAATGAAAAGTTCAAAAGGAGATCAAAGGAGAATACAAAAAAGCTCTCCAATTGGTGTTAATAACAAAAGAATTATAACTACAAAAGAGAGTGGAAAGAGTGCAACATCTTGA 3399 40.22 MVFLISIFNVKLSLILAKLKLELVEWLNCMLPHINLPLDASDEELRVCLSDGSVLCSILDKLCPGVCQGGNSKPITPNIERFLITLDELGLPGFEPSALEQGSIAPVLHCLSTLRASFDLSVGDEYTQNHSRKRWNLCEVDSLDGINNLSGQRFQDFQNGSVVSVPSYGLNSHIQYEDYGEQEQIHDVSGSNVVELIKSENLENVSTESLFNMINRILDGTVETKNGDVSHQVAYILRKVVQVLEQRILTHAGNLKHQSNLLKAREEKFLSKLRVLETLATGTTEENEVVMNQLQRLKIEMFKVEEMKNCEEQDKMALKEQKALCDVKLSNLKDELEKAKSEHENHCLQLETNAKEEKAKYEEKLNELECLLADSRKHVKELETFSESKSLKWKKKEFVYRNFVDDLLRAFQGLRISVDSIKREVLNTKGNYAEDFNFLGMKFKGLADVAQNYHAVLNENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKLTTVEYIGENGELVIINPAKQGKDNRRLFKFNKVFGPTCSQEDVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPDVSLRTEWGVNYRALNDLFEISQSRKGSISYEIGVQMVEIYNEQVRDLLSTSGLPKRLGIWNTTQPNGLAVPDAGMHPVRSTGDVLDLMKIGLTNRAVGATALNERSSRSHSVLTIHVRGVDLETDAILRGSLHLIDLAGSERVDRSEATGDRLKEAQHINKSLSALGDVIFALAQKTSHIPYRNSKLTQVLQSSLGGQAKTLMFVQINPDVDSYSETISTLKFAERVSGVELGAARSNKEGRYVRELMDQVAVLKDTIANKDEEIERLQLLKTNGNGVKHGVGSLRQESFSPRRHSSITPRQSQKPSGRKGLGMNKAASDVDNFSDYDRRSEAGSLQSMDDFKYHKRSESGSHLFIEDFRHHKRSGSGSHLSVEDFRHQKESSSQLRDLSQNVTDDVDLLGFGNADSDERLSDISDGGLSMGTETEGSICSVVEYTLFPEVPKPSDVSFADSKYPEGTLDVKRQAESATTGVKSLIPIPEKTNAPSKTGARPPQKPMQAKSSRVSLTKSSSKAPIASNTKLFIDKMKSSKGDQRRIQKSSPIGVNNKRIITTKESGKSATS 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22120259 22129700 - MELO3C005678.2.1 Cme09g01765 338625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01765 1132 PANTHER KINESIN-4-LIKE ISOFORM X1 18 1092 - -
Cme09g01765 1132 MobiDBLite consensus disorder prediction 1106 1132 - -
Cme09g01765 1132 Gene3D - 14 119 IPR036872 -
Cme09g01765 1132 MobiDBLite consensus disorder prediction 847 897 - -
Cme09g01765 1132 ProSitePatterns Kinesin motor domain signature. 701 712 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme09g01765 1132 PRINTS Kinesin heavy chain signature 751 772 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 PRINTS Kinesin heavy chain signature 548 569 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 PRINTS Kinesin heavy chain signature 702 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 PRINTS Kinesin heavy chain signature 671 688 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 PANTHER KINESIN-LIKE PROTEIN KLP-3 18 1092 - -
Cme09g01765 1132 Pfam Calponin homology (CH) domain 20 115 IPR001715 GO:0005515
Cme09g01765 1132 Coils Coil 815 842 - -
Cme09g01765 1132 Coils Coil 294 314 - -
Cme09g01765 1132 Coils Coil 453 473 - -
Cme09g01765 1132 MobiDBLite consensus disorder prediction 1032 1132 - -
Cme09g01765 1132 SUPERFAMILY Calponin-homology domain, CH-domain 17 114 IPR036872 -
Cme09g01765 1132 SMART kinesin_4 471 809 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 839 IPR027417 -
Cme09g01765 1132 ProSiteProfiles Kinesin motor domain profile. 473 801 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 MobiDBLite consensus disorder prediction 1069 1088 - -
Cme09g01765 1132 MobiDBLite consensus disorder prediction 860 880 - -
Cme09g01765 1132 Coils Coil 322 378 - -
Cme09g01765 1132 Pfam Kinesin motor domain 479 799 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme09g01765 1132 ProSiteProfiles Calponin homology (CH) domain profile. 17 119 IPR001715 GO:0005515
Cme09g01765 1132 MobiDBLite consensus disorder prediction 935 960 - -
Cme09g01765 1132 Gene3D Kinesin motor domain 416 803 IPR036961 -
Cme09g01765 1132 MobiDBLite consensus disorder prediction 935 955 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01765 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101218386 2092.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02149 Cme-Chr4:28783987 Cme09g01765 Cme-Chr9:22120259 1.63E-31 dispersed
Cme08g01303 Cme-Chr8:9587678 Cme09g01765 Cme-Chr9:22120259 7.88E-07 dispersed
Cme09g01765 Cme-Chr9:22120259 Cme12g01445 Cme-Chr12:22217024 4.37E-90 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g320 Blo02g01110 Blo03g00212 Bda06g00112 Bda08g00516 Bpe05g00646 Bpe07g00107 . Bma14g00667 . . Cma02g01449 Cma15g01228 Car02g01216 Car15g01107 . . Cpe05g00339 . . . . . . . Cla10g00365 Cam10g0377 Cec10g0397 Cco10g0390 Clacu10g0383 Cmu10g1218 Cre10g0632 Cone8ag0301 Cone12ag0307 . . . Csa05g00279 Chy09g01230 . . . . . . Bpe11g00603 Bma05g00820 Bma12g00075 . Cmo02g01485 Cmo15g01292 . . . . . Cpe13g00155 Bhi12g00265 . . . . . Lcy12g1649 Cla01g00260 . Cec01g0258 Cco01g0273 . . Cre09g2254 Lsi09g00255 . . Cme09g01765
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002869 5 3 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 1 2 54