Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01778 ATGGGAGGTTGCTGCTGCTGTTCTTCGAAAGGAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAACATGTTCCTTTGTCATCTCCACTTAGAACTCCCCGAGCATTTTCAACAGGGCTTTTAGTTGATACAAATCTAGATACATCAATTCCGGACACATATAGATCACCTCCATTGCCTATGCCATATGATGTTGTTTTAACAAGTCCACTTACTCCACCTGTGGCTCAAGAAATTGGCAGCTATAAGAATGAAGCTGCAGCTCAGACAGCAAATTCCAACACAATTCAAGAAACAGCATGCATAAACACTCGCGAAGCATCAGCCAAATGTGAAGGCGTCGATGAATCAGATTGCAAGAAGCATACAGATTTTGAAGTGAACACATTAAAGGAATCTGAAATTGAACTTTCAAAGGGTGTAGAATCTGCTGTCCTACCTATTGAAGAAGAGGATGTTTGCCCCATCTGTTTGGAAGAATATGATGGAGAGAACCCAAAACTTACCACAAAATGCGAACATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTGTGCGATCAGGAAATGGTTTTTAGCTCTCCAATTGATTAG 639 41.0 MGGCCCCSSKGTESNIAPGYYYYPRASEEHVPLSSPLRTPRAFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTSPLTPPVAQEIGSYKNEAAAQTANSNTIQETACINTREASAKCEGVDESDCKKHTDFEVNTLKESEIELSKGVESAVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSSPID 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22224576 22227642 - MELO3C005692.2.1 Cme09g01778 338638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01778 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Cme09g01778 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
Cme09g01778 212 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 212 - -
Cme09g01778 212 SMART ring_2 161 201 IPR001841 -
Cme09g01778 212 Pfam Ring finger domain 160 201 IPR001841 -
Cme09g01778 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 209 IPR013083 -
Cme09g01778 212 SUPERFAMILY RING/U-box 155 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01778 - - - csv:101215765 422.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01778 Cme-Chr9:22224576 Cme11g01927 Cme-Chr11:27334695 9.29E-11 dispersed
Cme02g00779 Cme-Chr2:9873669 Cme09g01778 Cme-Chr9:22224576 4.48E-11 transposed
Cme04g02299 Cme-Chr4:29945975 Cme09g01778 Cme-Chr9:22224576 6.77E-12 transposed
Cme09g00197 Cme-Chr9:1532189 Cme09g01778 Cme-Chr9:22224576 2.51E-28 transposed
Cme06g00168 Cme-Chr6:1026283 Cme09g01778 Cme-Chr9:22224576 5.81E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41