Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g01782 | AAGAATTGGCCGTCTTTCTCCGGCCATATAATTCCATTAATCATCTCCTCCAAATTTCTCACTTCTTCTTCTTCTTCTTCTTCTTCATTTGTTTACATTTCCGCCATGGGTTTCCCAGCAACTTACACTGAGCTTCTTCTCCCTAAGCTCTTCATCCATTTGCTCTCCTTCCTCGGCTTCCTCCGTAAGCTTATTTCCTTCCTCTTCCGCCTCTTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCCCTCCGATTCCTTCCCTACTTCTCCCTTCACCCACCTCGATCCTCTCTCCGCTGCCCTTCTCCGTGAGATTCTCCCCGTCGTCAAGTTCTCCGACCTTCTCGACCCCCCTGACTGCTGCGCTGTTTGTCTCTACGAGTTCGAGTCCGACGATGAGATCCGCCGTCTCGCTAACTGCCGTCACATCTTCCACCGCGGATGCCTCGATCGATGGATCGGTTACGGTCAGAGAACGTGCCCGCTTTGTAGAACTGTGTTTATTCCTCCTGATTTGAGAAGTGGTGGTGGTTGTAATTTTGATGATAGGCTTTGGGAGGATTCCGAAATCTTTGAACCTCTCCACACCGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCTTCTCACAACCGATGGTTTGTAG | 663 | 49.17 | KNWPSFSGHIIPLIISSKFLTSSSSSSSSFVYISAMGFPATYTELLLPKLFIHLLSFLGFLRKLISFLFRLFGLQDFLEPDIPWPNPSDSFPTSPFTHLDPLSAALLREILPVVKFSDLLDPPDCCAVCLYEFESDDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGGCNFDDRLWEDSEIFEPLHTDSSSSSSSSSSNLLTTDGL | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 22267005 | 22267860 | - | MELO3C005696.2.1 | Cme09g01782 | 338642 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g01782 | 220 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 36 | 193 | - | - | |
| Cme09g01782 | 220 | MobiDBLite | consensus disorder prediction | 199 | 220 | - | - | |
| Cme09g01782 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 172 | IPR013083 | - | |
| Cme09g01782 | 220 | Pfam | Ring finger domain | 125 | 169 | IPR001841 | - | |
| Cme09g01782 | 220 | PANTHER | BNAA09G11240D PROTEIN | 36 | 193 | - | - | |
| Cme09g01782 | 220 | SMART | ring_2 | 126 | 168 | IPR001841 | - | |
| Cme09g01782 | 220 | CDD | RING-H2 | 126 | 169 | - | - | |
| Cme09g01782 | 220 | ProSiteProfiles | Zinc finger RING-type profile. | 126 | 169 | IPR001841 | - | |
| Cme09g01782 | 220 | SUPERFAMILY | RING/U-box | 111 | 175 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme09g01782 | Cme-Chr9:22267005 | Cme09g00120 | Cme-Chr9:891745 | 1.23E-12 | dispersed | |
| Cme08g00800 | Cme-Chr8:5325076 | Cme09g01782 | Cme-Chr9:22267005 | 8.35E-16 | transposed | |
| Cme08g02066 | Cme-Chr8:26064667 | Cme09g01782 | Cme-Chr9:22267005 | 4.85E-06 | transposed | |
| Cme10g00580 | Cme-Chr10:3728348 | Cme09g01782 | Cme-Chr9:22267005 | 6.86E-15 | transposed | |
| Cme11g02182 | Cme-Chr11:29147180 | Cme09g01782 | Cme-Chr9:22267005 | 2.21E-49 | wgd | |
| Cme06g00166 | Cme-Chr6:1005706 | Cme09g01782 | Cme-Chr9:22267005 | 3.41E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g01782 | K16281 | - | csv:101215533 | 364.385 |