Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01786 ATGGCTGGTGAGCTTTGTGAAGGGGAAGGAAAATCGAACGAGATGGTAGTTGGAGGAGAGTTTTATTACAATTCCAATTCGAATTCAAACAACATCCCTAATCAATTCACAAATCAGATCCAAACCGGGTTCGGTTCCACCACCGAACCTGCCGTGGTGGAGATGTTCAACAACGAGTCGAGTGGCGGTGGCGGTGATGGCGGCGATGATGATGAGTCGTTTCCCCAAAATATGATGGTGGTTGGACCGTGGGGGACGACGGCTACGACTATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACATCAACAACAACAAAACCAATCATCTTTCCCCATTTTTCATCTTAGAAACTCAAAGTTTTTGGCCCCAACTCAAGAACTTCTTTATGAGTTTTGTAGTCTTGGAATCACCAATCATTCTTCTTCTTCACCAAAACACAAACATCCTTCTTCTTCTTCAACCAATTTCTCTCTTCACTCACTTGACTTCATGGAGTTGCAAAAGAGGAAAACCAAGCTTTTTTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGTGAGCAAATGAAGGCGGTAGTGGCATCGTTCGAAGCAGTAGCGGGGAGTGGGGCGGCGAGGGTGTACTCGGCGTTGGCGTCGAAGGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGACAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACCACAAGAGGAGAAACCCCAAGACTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGTCCTCAACGTGGCCTCCCTGAGCGTTCTGTTTCCGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTCTCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTGTGGAAGCCAATGGTAGAGGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGATAACAGTTTCAACAACAATGCCAACAACTCTTTTGATGGGGTGACGGATTTCAATGACGACATTGACGGTCATCGATCGATTGCCACACGACTAGAGGATCAAAAACCGACACCAGATCAACTCTTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAGCAACTCGGAGAAGAATGATCATTCAAGAACAATTAAAACGATGCAAAACCACCACGGACACCACCAACTCCACGGAAACCACAACCACACCTTCGGACGAGTAGTGGGGGATGCATTTGGCACTGTAGAACTCGACTTCTCGTCCTACAACCACCATACAGGTAGTGGTGGAGTTTCGTACCATAACAGCAGCAACAACAACAACAGTCAACATTTCAACAACGGCAGTGGTGGAGGCGTGTCGTTGACATTAGGGTTACAACAGCATGCCGCAGCCGGGGGGAATGGAAACGGAGGTGTGAGCATTGCCTTCGCTTCAGCAGGACCGGCGGTGGGGCAAAACTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAATATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCTTATAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATGA 1827 45.65 MAGELCEGEGKSNEMVVGGEFYYNSNSNSNNIPNQFTNQIQTGFGSTTEPAVVEMFNNESSGGGGDGGDDDESFPQNMMVVGPWGTTATTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQQQQNQSSFPIFHLRNSKFLAPTQELLYEFCSLGITNHSSSSPKHKHPSSSSTNFSLHSLDFMELQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGSGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNNANNSFDGVTDFNDDIDGHRSIATRLEDQKPTPDQLLRIDSECLSSIISSNSEKNDHSRTIKTMQNHHGHHQLHGNHNHTFGRVVGDAFGTVELDFSSYNHHTGSGGVSYHNSSNNNNSQHFNNGSGGGVSLTLGLQQHAAAGGNGNGGVSIAFASAGPAVGQNSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22302206 22306415 + MELO3C005699.2.1 Cme09g01786 338646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01786 608 Gene3D - 321 383 - -
Cme09g01786 608 SUPERFAMILY Homeodomain-like 319 385 IPR009057 -
Cme09g01786 608 SMART HOX_1 318 382 IPR001356 GO:0003677
Cme09g01786 608 Coils Coil 199 219 - -
Cme09g01786 608 CDD homeodomain 318 379 IPR001356 GO:0003677
Cme09g01786 608 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 4 551 - -
Cme09g01786 608 Pfam Associated with HOX 151 265 IPR006563 -
Cme09g01786 608 Coils Coil 607 608 - -
Cme09g01786 608 ProSiteProfiles 'Homeobox' domain profile. 315 378 IPR001356 GO:0003677
Cme09g01786 608 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 551 - -
Cme09g01786 608 Pfam Homeobox KN domain 335 374 IPR008422 GO:0003677|GO:0006355
Cme09g01786 608 MobiDBLite consensus disorder prediction 508 527 - -
Cme09g01786 608 SMART prehox3 145 267 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01786 Cme-Chr9:22302206 Cme11g00313 Cme-Chr11:3310166 1.51E-96 dispersed
Cme09g01786 Cme-Chr9:22302206 Cme04g02323 Cme-Chr4:30173085 2.88E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41988 PF07526 POX 6.40E-41 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01786 - - cmo:103482774 1074.69