Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01794 TGTCCTCAGGTTTGCACTCTTCACTCAATCCCTCTTCAATTTTTTATTTTTTTCATTCATCTTTCATCGCCGATCGCTTTTGCAGTTCGTAGATTCATCATGGCGACTGCATCGAACTCTCTCTCCCTGAAACACGGCCTCTCTCTCTGGTGCCCGCACTCTACTTCCTTTTCCGTACATCATCAACAGCCTTCTTCTGTTGCCTTCAGAGGTTTCCGGAGAAGCTACGTTTCTGCCTCCACGGATTTCGCCAACGACAATAGAGAGTTTGTGATTGTTGGTGGTGGAAATGCTGCTGGTTATGCTGCTCGTACTTTCGTTGAACACGGGATGGCGGATGGGCGGCTTTGTATAGTATCTAAGGAGGCGTTTGCACCGTACGAGCGTCCGGCTTTGACAAAAGGTTACTTGTTTCCTCTTGATAAAAAACCAGCTCGCTTGCCTGGGTTTCATACTTGTGTTGGATCTGGTGGGGAAAGGCAAACACCAGAATGGTACAAGGATAAAGGTATTGAGACGTTTTATCAAGATCCAGTTATGGGAATTGATATAAAAAACCAAACCCTGAGAACTAATTCAGGCAAACTGCTCAAGTATGGAGCCCTTTTAATAGCAACAGGGTGTACAGCCTCAAGATTTCCTGATAAGATCGGTGGTGGGCTACCTGGTGTTCACTACATCCGAGATGTTGCAGATGCAGATTCACTAATTTCCTCATTGGAGAAAGCAAAAAAGGTGGTGGTTGTTGGTGGTGGTTATATTGGTATGGAGGTCGCTGCAGCTGCTGTTGGTTGGAAACTTGATACAACAATCATATTTCCCGAGAATCATCTATTGCAAAGACTTTTTACTCCTTCGCTGGCCAAGAAATATGAAGAATTTTACCAGGAGAATGGTGTTAAATTCTTAAAGGGGGCCTCCATAAAAAATTTGGAAGCTGGTGCAAATGGTCGGGTCACTTCTGTTAGACTTGCGGATGGATCCTCCATTGAAGCAGACACGGTAGTAATAGGCATTGGTGCAAAGCCTGCGGTCGGTCCGTTTGAGCAAGTGGGATTGAATAGCACTGTTGGCGGTATACAGGTTGATGGCCTGTTCAGAACAAAAGTTCCAGGAATTTTCGCAGTTGGGGATGTGGCAGCATTCCCATTAAAGCTGTATGATCGTGTAGCTCGGGTCGAACATGTGGATCATGCTCGTCGGTCAGCTCAGCATTGTGTCAAAGCATTGCTAACTGCTCAAACTCAAACATACGATTATCTTCCATACTTCTACTCAAGGGTGTTTGAATACGAAGGGAGCCCTAGGAAAATATGGTGGCAATTTTTTGGGGATAATGTTGGTGAGACAGTTGAAATTGGGAACTTTGATCCTAAGATCGCTACTTTTTGGATTGATTCTGGTAAATTAAAAGGGGTTCTTCTTGAAAGCGGAAGTCCTGAGGAATTTGAACTTCTTCCTAAACTCGCAAGGTTCCAGCCTTCGGTTGATAAATCTAAACTTCAAAATGCATCTTCAGTCGAGGAAGCACTGGATATTGCCCGTGCATCTTTGCAACAGGTTGGAGCTGCGGTTTAA 1578 44.68 CPQVCTLHSIPLQFFIFFIHLSSPIAFAVRRFIMATASNSLSLKHGLSLWCPHSTSFSVHHQQPSSVAFRGFRRSYVSASTDFANDNREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKDKGIETFYQDPVMGIDIKNQTLRTNSGKLLKYGALLIATGCTASRFPDKIGGGLPGVHYIRDVADADSLISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAKKYEEFYQENGVKFLKGASIKNLEAGANGRVTSVRLADGSSIEADTVVIGIGAKPAVGPFEQVGLNSTVGGIQVDGLFRTKVPGIFAVGDVAAFPLKLYDRVARVEHVDHARRSAQHCVKALLTAQTQTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFELLPKLARFQPSVDKSKLQNASSVEEALDIARASLQQVGAAV 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22351439 22357312 + MELO3C005708.2.1 Cme09g01794 338654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01794 525 Gene3D - 213 340 IPR036188 -
Cme09g01794 525 SUPERFAMILY FAD/NAD(P)-binding domain 89 431 IPR036188 -
Cme09g01794 525 PRINTS FAD-dependent pyridine nucleotide reductase signature 199 217 - -
Cme09g01794 525 PRINTS FAD-dependent pyridine nucleotide reductase signature 332 348 - -
Cme09g01794 525 PRINTS FAD-dependent pyridine nucleotide reductase signature 245 263 - -
Cme09g01794 525 PRINTS FAD-dependent pyridine nucleotide reductase signature 91 110 - -
Cme09g01794 525 PRINTS FAD-dependent pyridine nucleotide reductase signature 358 380 - -
Cme09g01794 525 PANTHER APOPTOSIS-INDUCING FACTOR 1 39 520 - -
Cme09g01794 525 PANTHER MONODEHYDROASCORBATE REDUCTASE, CHLOROPLASTIC/MITOCHONDRIAL 39 520 - -
Cme09g01794 525 Gene3D - 423 509 IPR016156 GO:0016491|GO:0050660
Cme09g01794 525 Pfam Pyridine nucleotide-disulphide oxidoreductase 90 403 IPR023753 GO:0016491
Cme09g01794 525 PRINTS Pyridine nucleotide disulphide reductase class-I signature 373 380 - -
Cme09g01794 525 PRINTS Pyridine nucleotide disulphide reductase class-I signature 333 347 - -
Cme09g01794 525 PRINTS Pyridine nucleotide disulphide reductase class-I signature 89 111 - -
Cme09g01794 525 PRINTS Pyridine nucleotide disulphide reductase class-I signature 245 270 - -
Cme09g01794 525 Gene3D - 91 406 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01794 K08232 E1.6.5.4; monodehydroascorbate reductase (NADH) [EC:1.6.5.4] - csv:101214011 971.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00393 Cme-Chr9:3523745 Cme09g01794 Cme-Chr9:22351439 7.91E-106 dispersed
Cme09g01794 Cme-Chr9:22351439 Cme10g01241 Cme-Chr10:13055369 3.09E-52 dispersed
Cme09g01794 Cme-Chr9:22351439 Cme04g02417 Cme-Chr4:30800602 3.47E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g38 . . . . . . . Bma14g00599 . . . Cma15g01251 . Car15g01128 . . . . . . . . . . . . . . . . . . . Cone6ag0808 Cone9ag0805 . Csa05g00247 Chy09g01259 . . . . . . Bpe11g00669 . . . . Cmo15g01316 . . . . . Cpe13g00134 Bhi12g00305 . . . . . . Cla01g00231 . Cec01g0229 Cco01g0243 Clacu01g0234 Cmu01g0227 Cre09g2283 Lsi09g00223 . . Cme09g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008344 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34