Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01809 GCCTTAGTATTTGTGTTCTCACCTCTTTTTGCTAATTCATTACCATTATCAACACGAGGAAGGTGGATCATTGATTCGCAAACAGGTCGTCGAGTGAAACTTGTGTGTATGAATTGGCCTTCCCACACACAGAGCATGTTGATAGAAGGCCTCAACCATAGGCCGTTAAAAGACCTAGCAGACGAGGCAATCAAGCTAAGATTTAATTGTGTACGACTCACATATGCAACTCATATGTTCACTCGTTATGCAAATAGGACAATTGAAGAAAACTTTGATCTTCTTGATTTAAAACAAGCAAAAGCTGGATTGGCTCAATATAATCCTTTTGTGTTGAATAAGACTATTGCTGAAGCATATGAAGCTGTTGTTGATATATTGGGGGCGAGTGGTTTAATGGTCATCGCTGACAATCACATAAGCCAACCAAGATGGTGTTGCTCTCTTGACGATGGCAATGGCTTCTTCGGAAACAATAATTTTGACCCTCAAGAATGGCTACAAGGGCTTAGCTTAGTTGCTCAACGCTTTCGCAACAAATCAACGGTGGTAGGAATGAGTTTACGAAATGAGATACGTGGCTTTATGGAAAATGCAAATGATTGGAACAAATATATAACTCAAGGG 627 40.03 ALVFVFSPLFANSLPLSTRGRWIIDSQTGRRVKLVCMNWPSHTQSMLIEGLNHRPLKDLADEAIKLRFNCVRLTYATHMFTRYANRTIEENFDLLDLKQAKAGLAQYNPFVLNKTIAEAYEAVVDILGASGLMVIADNHISQPRWCCSLDDGNGFFGNNNFDPQEWLQGLSLVAQRFRNKSTVVGMSLRNEIRGFMENANDWNKYITQG 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22438605 22439338 + MELO3C028070.2.1 Cme09g01809 338669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01809 209 Gene3D Glycosidases 13 209 - -
Cme09g01809 209 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 5 209 - -
Cme09g01809 209 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 5 209 - -
Cme09g01809 209 Pfam Cellulase (glycosyl hydrolase family 5) 52 205 IPR001547 GO:0004553|GO:0071704
Cme09g01809 209 SUPERFAMILY (Trans)glycosidases 13 208 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01809 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:101207450 382.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01809 Cme-Chr9:22438605 Cme09g01811 Cme-Chr9:22448151 9.25E-138 dispersed
Cme09g01808 Cme-Chr9:22434502 Cme09g01809 Cme-Chr9:22438605 5.87E-33 tandem
Cme09g01809 Cme-Chr9:22438605 Cme09g01810 Cme-Chr9:22438939 3.71E-52 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g56 . . . . . . . . . . Cma02g01000 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01268 . . . . . . . . . . Cmo02g01450 . . . . . . . Bhi12g00177 . . . . . Lcy12g1599 Cla01g00219 Cam01g0226 Cec01g0217 Cco01g0227 Clacu01g0221 Cmu01g0214 Cre09g2295 Lsi09g00206 . . Cme09g01809
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015083 0 0 0 0 0 1 0 4 2 0 0 0 0 4 0 1 0 0 0 1 0 0 0 1 0 0 1 0 0 0 15