Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01813 ATGGCTAAAAAGATTATATTCTATTTAATTTCTTTAATTTTCTTCTCTTTATTGGTTCTTTCACAATCCTTACCTCTTTCCACAAGAGGAAGATGGATTGTAGACTCTAAAACAGGCCAACGTGTGAAGCTAAGCTGTGTTAATTGGGCCTCTCATGCACAGTCCATGTTGGCACAAGGTCTTGACAAGCGACCATTGAAGGACTTAGCTAATGATATCATTAGCCGCGATTTCAACTGCGTGCGCTTGACTTGGTCGACCCACATGTTCACTCGCTACTCCCACATGACCATCGTTGATGTCTTGGACGATCTTGATATCCAAAATGTCAAAAGCGGAGTTCAAACACATAACCCTGAGATGTTAAACATGACGGTTGCTCATGCATTCAAAACCGTCGTCGATGGATTGGGCAATGCGGGTCTCATGATTGTTTTGGACAACCACATTAGCCAGCCGAGATGGTGTTGCTCCCTCGACGATGGCAATGGCTTCTTTGGAGACCGTCATTTCGACGCCCTTGAATGGCTTCAGGGATTGGACTATGTTGCTAGAAATTTCACTGGGCATTCTCAAGTGATAGGGATGAGCCTAAGAAATGAACTTCGAGGGCCATATACAAACATGGACAACTGGTACAAATACGTGAGCAATGGAAGCCATTTGATCCACACAAAAAACCCGAATCTCCTAGTAATAATTTCAGGTGTAACTTTTGATACCGATCTAAGCTTCCTAAAGGAAAAGCCATTAGGGTACAACTTGCACAATAAAGTAGTGTTGGAGGCACATTTATACCCCTTCAGTGGGAGTGAGAAATTACCCGAGAGCAAGTTTGTGAAGAAGCCATTAAACGTAGTATGCAATCAAGTGAAGGAGAAATTCGAGAGAGAAGCTGGATTTGTGGTGAACATGGAGGATGAACCATATCCATTGTGGCTTAGTGAATTTGGGTATGATCTAAGAGGTGACAACAAGGCTCAAAACAGGTTCATGAGTTGCTTTTTGGCTCATATTGTTGGCAAGGATCTTGATTGGGCTTATTGGGCTTTCCAAGGAACTTACATGTATAGACAAGGTCAAGAAAGTGTAGATGAAGCTTTTGGCATCATGGATAGCACTTGGACTAAAGATCGAAACCCTCAACTCAATCAAATGCTTCAACTTGCTAAAAGAATCAACCAAGATCCAAATTCGAATGCATCAATGTCCTACATAATATTACATCCAGTATCGGGACAATGTATCAGATCAAATGGTCAAGGAGGAATTGCACTTGGCGATTGCTTGACGCCGACACAGTGGACCTACAGCGGAGATGGAAGTTCGATGAAGTTGTTGTCGAACGGGCAATGTTTGAAGTCGGCTGGAGATGGGAAGCCGCCCGTTGTCTCGACGGAATGCTCCGGTGAGGAAAGCAAATGGACGATGGCTTCAAAGGCTAAGCTTCAATTGGCCACCAAAAGTGGTGGAGAAGACTTTTGTTTAGAGAAGAAATCTGATACTAAAATTGTTGTGAAGAGATGCATTTGCCTCAAAGATGAGTTGAATTGCTTTAATGATCCGCAGCCCCAGTGGTTCAAGCTTGTTCCAACAAATGTTGCTTAG 1608 43.03 MAKKIIFYLISLIFFSLLVLSQSLPLSTRGRWIVDSKTGQRVKLSCVNWASHAQSMLAQGLDKRPLKDLANDIISRDFNCVRLTWSTHMFTRYSHMTIVDVLDDLDIQNVKSGVQTHNPEMLNMTVAHAFKTVVDGLGNAGLMIVLDNHISQPRWCCSLDDGNGFFGDRHFDALEWLQGLDYVARNFTGHSQVIGMSLRNELRGPYTNMDNWYKYVSNGSHLIHTKNPNLLVIISGVTFDTDLSFLKEKPLGYNLHNKVVLEAHLYPFSGSEKLPESKFVKKPLNVVCNQVKEKFEREAGFVVNMEDEPYPLWLSEFGYDLRGDNKAQNRFMSCFLAHIVGKDLDWAYWAFQGTYMYRQGQESVDEAFGIMDSTWTKDRNPQLNQMLQLAKRINQDPNSNASMSYIILHPVSGQCIRSNGQGGIALGDCLTPTQWTYSGDGSSMKLLSNGQCLKSAGDGKPPVVSTECSGEESKWTMASKAKLQLATKSGGEDFCLEKKSDTKIVVKRCICLKDELNCFNDPQPQWFKLVPTNVA 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22458367 22460180 - MELO3C005724.2.1 Cme09g01813 338673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01813 535 SUPERFAMILY Ricin B-like lectins 399 509 IPR035992 -
Cme09g01813 535 Gene3D Glycosidases 26 391 - -
Cme09g01813 535 Pfam Cellulase (glycosyl hydrolase family 5) 63 351 IPR001547 GO:0004553|GO:0071704
Cme09g01813 535 Gene3D - 406 515 - -
Cme09g01813 535 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 8 531 - -
Cme09g01813 535 SUPERFAMILY (Trans)glycosidases 24 391 IPR017853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01813 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - csv:101211675 925.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01514 Cme-Chr9:20300122 Cme09g01813 Cme-Chr9:22458367 0 dispersed
Cme09g01810 Cme-Chr9:22438939 Cme09g01813 Cme-Chr9:22458367 2.35E-94 dispersed
Cme09g01813 Cme-Chr9:22458367 Cme11g00535 Cme-Chr11:5605503 8.89E-166 dispersed
Cme09g01811 Cme-Chr9:22448151 Cme09g01813 Cme-Chr9:22458367 1.70E-78 proximal
Cme09g01812 Cme-Chr9:22453438 Cme09g01813 Cme-Chr9:22458367 1.91E-14 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g59 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0270 . . . . . Chy09g01270 . . . Bda07g00471 . . Bpe11g00649 . . . Cmo02g01448 . . . . . . . Bhi12g00175 . . . . . Lcy12g1597 Cla01g00215 Cam01g0222 Cec01g0213 Cco01g0221 Clacu01g0216 Cmu01g0210 Cre09g2298 Lsi09g00202 . . Cme09g01813
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000102 1 5 0 0 1 17 0 16 15 11 16 15 7 9 8 11 14 2 0 12 12 11 2 7 10 18 6 7 5 3 241