Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01821 ATGGAAGCTCTGTGGATTTTCCGCTTCGTTTTGGTTATGGGGTTGGTTTTTTCGCCCATTAATGGCGACCCAGTTGAAGATAAGCTAGCTTTGCTTGATTTTGTGAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCTGTTTGTCATTACTGGACTGGTATAACTTGTAGTCAAGATGAATCTCGTGTTATAGCTGTTCGTTTGCCCGGAGTTGGTTTTCACGGCCCGATTCCACCGAATACTCTCAGCCGGCTGTCGGCGCTGCAAATATTGAGTCTCAGATCCAATCGTATAACTGGGGATTTCCCTTTGGATTTCTCGAAGCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCATCTTTGTGAATCTCTCTAATAATGGCTTCAATGGTCAAATTCCTAATTCACTTTCTAATCTAACTTCACTTACGGGTTTGAATCTGGCCAACAACTCTCTCTCAGGAGAAATACCTGACCTCCAAATCCCCCGATTGCAGGTTCTGGATTTGTCTAACAACAATCTGAGTGGGAGTTTGCCTAAATCTTTGCAGAGATTTCCAAGGTCTGTATTTGTAGGCAATAATATATCCTTCGGAAGTTCTTTATCAAACAATCCTCCTGTACCGGCACCACTGCCCGTGTCGAATGAAAAGCCGAAGAAGTCTGGGGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATATTGGGACTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTTTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGCGGAATGTCGCCAGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAAGGGTGCCATTATGCTTTTGACTTGGAGGATCTGTTGAGGGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCCTATAAAGCAATTCTAGAGGATGCCACCATAGTTGTAGTTAAAAGGTTGAAGGATGTAAGTGCTGGGAAACGTGATTTTGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGCTGAATTGAAGGCCTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAAGGAAGCGTCTCTGCAATGTTACACGGTAAACGCGGAGAGGAAAAAACCCCATTAGATTGGGACACGAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCACGTGTCCATGCTGAAAACGGCGGGAAGCTCGTGCATGGAAATGTGAAATCGTCAAACATATTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACCATAACAAGCTCGCTCTCTCCCCCTATATCTCGTGCTGCAGGTTACCGAGCCCCAGAAGTGACAGATACTCGCAAGGCAACACAAGCTTCAGATGTTTTCAGCTTTGGTGTCGTGCTCCTCGAGCTTCTAACTGGAAAGTCTCCGATCCACGCAACAGGTGGCGAAGAGATTGTCCATTTGGTTCGATGGGTTCATTCAGTTGTAAGAGAGGAGTGGACAGCAGAGGTATTTGATGTAGAGTTGATGAGGTATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTGGCCAGGATACCTGATCAAAGACCGAAAATGCCGGAAATTGTGAAGATGATCGAAAACGTTCGTCCAATGGAAGCCGAGAACCGACCTTCCACGAATCAATTAGAAAGCTCAATGCTGCCGCAAGCTGTTGAGACAGAAAATTCAACCACTCAGTGA 1887 44.52 MEALWIFRFVLVMGLVFSPINGDPVEDKLALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPPNTLSRLSALQILSLRSNRITGDFPLDFSKLSNLSYLYLQFNNFSGPLPSNFSVWKNLIFVNLSNNGFNGQIPNSLSNLTSLTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSLPKSLQRFPRSVFVGNNISFGSSLSNNPPVPAPLPVSNEKPKKSGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATIVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVAELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMPEIVKMIENVRPMEAENRPSTNQLESSMLPQAVETENSTTQ 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22530090 22533630 + MELO3C005732.2.1 Cme09g01821 338681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01821 628 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Cme09g01821 628 SUPERFAMILY L domain-like 37 208 - -
Cme09g01821 628 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515
Cme09g01821 628 MobiDBLite consensus disorder prediction 602 628 - -
Cme09g01821 628 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Cme09g01821 628 PANTHER PROTEIN, PUTATIVE-RELATED 21 609 - -
Cme09g01821 628 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Cme09g01821 628 Pfam Protein kinase domain 329 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01821 628 Gene3D Ribonuclease Inhibitor 25 231 IPR032675 -
Cme09g01821 628 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Cme09g01821 628 ProSiteProfiles Protein kinase domain profile. 326 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01821 628 PANTHER OS05G0588300 PROTEIN 21 609 - -
Cme09g01821 628 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524
Cme09g01821 628 MobiDBLite consensus disorder prediction 599 628 - -
Cme09g01821 628 Gene3D Transferase(Phosphotransferase) domain 1 402 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01954 Cme-Chr5:28090976 Cme09g01821 Cme-Chr9:22530090 0 dispersed
Cme09g01821 Cme-Chr9:22530090 Cme09g01959 Cme-Chr9:23541961 0 dispersed
Cme06g01065 Cme-Chr6:7781833 Cme09g01821 Cme-Chr9:22530090 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65175 PF00069 Pkinase 1.80E-33 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01821 - - csv:101211836 1170.99