Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01822 ATGGCTTCGAAACGGATCTTGAAAGAGCTCAAGGATCTCCAGAAAGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCTGGAGGAGTGTTTCTTGTCAACATTCATTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAGGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAGCAGTGGAGCCCTGCATTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCGCTGCTAACGGACCCAAATCCTGATGATCCTTTGGTGCCAGAGATTGCGCATATGTACAAGACTGACAGAAGCAAGTACGAAGCAACTGCCAGAAGCTGGACCCAGAAATATGCTATGGGTTAG 447 46.98 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22536861 22542327 + MELO3C005733.2.1 Cme09g01822 338682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01822 148 PANTHER BNAA01G32320D PROTEIN 3 145 - -
Cme09g01822 148 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Cme09g01822 148 SUPERFAMILY UBC-like 2 147 IPR016135 -
Cme09g01822 148 Pfam Ubiquitin-conjugating enzyme 5 141 IPR000608 -
Cme09g01822 148 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Cme09g01822 148 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Cme09g01822 148 SMART ubc_7 4 147 - -
Cme09g01822 148 CDD UBCc 3 142 IPR000608 -
Cme09g01822 148 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01822 K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D [EC:2.3.2.23] - csv:101210687 313.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00128 Cme-Chr6:807639 Cme09g01822 Cme-Chr9:22536861 7.28E-106 dispersed
Cme09g01822 Cme-Chr9:22536861 Cme09g01961 Cme-Chr9:23550448 1.34E-107 dispersed
Cme04g01404 Cme-Chr4:19947897 Cme09g01822 Cme-Chr9:22536861 1.87E-17 transposed
Cme05g00062 Cme-Chr5:419651 Cme09g01822 Cme-Chr9:22536861 1.06E-57 transposed
Cme07g01371 Cme-Chr7:19248378 Cme09g01822 Cme-Chr9:22536861 4.96E-42 transposed
Cme07g01687 Cme-Chr7:22401086 Cme09g01822 Cme-Chr9:22536861 6.59E-22 transposed
Cme08g00299 Cme-Chr8:1910948 Cme09g01822 Cme-Chr9:22536861 1.72E-12 transposed
Cme08g02090 Cme-Chr8:26510226 Cme09g01822 Cme-Chr9:22536861 5.72E-108 transposed
Cme10g01611 Cme-Chr10:21362552 Cme09g01822 Cme-Chr9:22536861 5.00E-06 transposed
Cme02g02097 Cme-Chr2:26789740 Cme09g01822 Cme-Chr9:22536861 2.68E-42 transposed
Cme04g01474 Cme-Chr4:21049367 Cme09g01822 Cme-Chr9:22536861 3.54E-06 transposed
Cme07g00413 Cme-Chr7:2693049 Cme09g01822 Cme-Chr9:22536861 4.96E-13 transposed
Cme06g01066 Cme-Chr6:7786283 Cme09g01822 Cme-Chr9:22536861 2.26E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g99 Blo02g01137 . . Bda08g00487 Bpe05g00677 . . . . . . . Car02g01180 . . . Cpe05g00618 . . . . . . . . . . . . . . . Cone12ag0264 Cone6ag0831 Cone9ag0830 . Csa05g00222 Chy09g01278 . . . Bda07g01917 . . . Bma05g00850 . . Cmo02g01437 . . . . . . Cpe13g00124 Bhi12g00166 . . Lac11g2026 Hepe06g1497 . Lcy12g1590 . . . . . . . Lsi09g00193 . . Cme09g01822
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251