Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g01828 ATGGAAGAAATGAGCGAGGATATGACGCTATTGGAAGCGACTGAGGATGCACATGTCCAAAATAAGGTCAGGCAAGATGCTCCGGAGAATGAGTATGTGCTGAAACCTGAAAATACCAACGTAGTTGAATCACAGGAAATGGTTACACCTGTTGACGGTGGCTATTCACAATATTATCCTCATGAATTTACTGACATCTTAGAGGGCAAGAATCTGAATAGGTGTAAAAGCAATTTGAAATTATCTGATCAACCAGAGTGCAGTCCTCATTGTATGGATGATGCTGGTGTTATGGTTGAAGAGTTGACTGTGAAGAATCACAACGGTTCCAATTTAGCAATTATAGGTCCATCAGACAATAGAGCACGGCTGCTTTCTAGGCATAGTCAGTGGCAACATCTTTACCAGCTTGGAAGTGGTTCAGGAAGTGGGAGTTCACGTCTAGATACTTCTTACAAGAACCATGGTCTGGCAGTAACCCCTGGCTTGGAGAACGGTGGGTACACATCTTTTCCGGAGGCTTTTGCTGGAAGAGCCAGTCGTAATGATTGTGGAGAAGAATTGGAAGAAATGAAGGCTACTGACAATAAGGGTGGTGATACTCAGGGCAGCATTCGGACCAAGATTCTATCAAAATCGGGTTTTCCTGAATTTTTTGTTAAAAGTACCTTGAAAGGCAAGGGGATCATTCGCAGAGGAGTACAACTGGAGGGCTTTAATGTTGAAAATAGAAACCCTAAGAATGCGAGGATTGGTGGGGGTATTTCATTGGCATCTGATTCATCTTTACAGCATGATGTTAAGCCTGTCATTCCTGCTTTGTATAGGAAATCTGAGCATAAACATCGGGGTTCTTCTTTAGATGGCATTAGCCTGAGAGAATGGCTTAAGGTTCCCAACCAAAAAGTAAATAAAATTAAATGCTTGTATATATTTAGGCACGTAGTTGAGCTAGTGGAGCGTTCTCATGCTCGGGGGGTTTTGTTGCATGACTTACGTCCATCTTCTTTCAGGATATTGACGACAAATCAGGTAAGGTATGTTGGAACTTTTATTCAAAGTAAAACTCCAGAAAGCCTAATGGTTAAAGATGGTCAGTGTTCAGATAGCCATCTGACTCGGAAAAGGCCATTAGAGCAAGGGAACTTTCTGTCATTTGGCGGATCTCCTAAAAAACAAAAAGATGCCCAGAATATGAGTCTTATGGCCCGACATTCTTATTTTCCTTTTAAATCTGGTGCCAGTCTTGAAACTGCAAACACTAGGGACTGCAATAAGAATGCTTCGGAAAATTACAATGAACATTTTGCGGAACAGGGGGGTTGGAACAAGCCTGCTGGCCTTCGAGCTTATGATTCTGCCCAGACCTCAATAAGTGACCTATTGGAAGAGACGTGGTATGTTAGTCCAGAGGAGCTTATGACAGGATGCTGCTCAGCTAAATCAAACATATTCTCTCTTGGTGTTCTTCTTTTTGAGTTACTTGGAAAGTTTGATTCAGATGGTGCACTTGCTTCGGCAATGTCAAATTTGCGTGACAGGATTCTTCCTCCCAGCTTTCTAGCCGATAATTTGAAGGAAGTTGGTTTTTGTCTTTGGCTGCTTCATCCTGAACCTGCATCTCGTCCTACAGCAAGGGAAATTTTAGAATCAGAACTAATTAATGGAATGCCAAGTGTTCCGGAAGCGGAAGCGGAGCTTTCAACATCTATTGATGAGGAAGATGCTGAATCAGAGTTATTATTGCAGTTTCTCACATCATTGAATGAGCAGAAGCAGAAACAAGCCTCGAAGTTGGTGGAAGACATACGGTATTTAGAATCAGATATTGAAGAAGTCAATAAAAGGCACAATTCAGCCAAACCCGTGGATAAGTCTGGCTTGTCTACTGTGGATGGAAGGGATGATTTGATCCTTCATGGAGGATATTTAAATTCGGATCCGTGCTCTCAGGTATATAGAATATCACATACCAATGAAGAGAGAATAGAAAAAAATATAAGTCAGCTTGAAAGTGCTTATTTTTCCATGAGATCAAAAGTAGATCCTTCTGAGAATGATTCAGCAATTCGGACAGACAACGATTTACTGAGAGCTCGGGAAAACTGCTATCTACCACAAAAAGATGATGAGAGGAGTCACAATGATCGTCTGGGTGCCTTTTTTGATGGATTTTGCAAGTACTCTCGTTACAGCAAGTTTGAAGTACGTGGAGTACTGAGAAATGGTGATTTTAACAGTTCCTCGAATGTAATTTGTTCCTTGAGTTTTGATCGGGATGAGGACTATTTTGCTGCTGCTGGAGTGTCAAAGAAAATAAGGATTTTTGAGTTTAACTCAGTCTTTAATGACTCGGTAGATATTCACTATCCCGCTGTTGAAATGTTTAATAGATCAAAGCTTAGCTGTATTTGCTGGAATGGCTACATCAAGAACTATTTGGCTTCAACTGATTATGATGGTGTTGTTAAGAAGAACTGTTTGGGCACAATTAGGAACATAGCGAACGTCTGCTGTGTTCAGTTCTCTGCCCACTCAAGCCATTTGCTGGCTTTTGGGTCTGCTGATTACAGAACATATTGCTTTGATCTACGCAATACAAAAGCTCCTTGGTGTGTGTTGGGTGGCCATGAGAAAGCTGTAAGCTACGTGAAGTTCTTGGACTCAGGGACCCTCGTTTCTGCATCCACAGACAACACGTTGAAGCTATGGGATCTTAATAAAACCAATCCTACTGGCTTATCTACAAAAGCTTGCAGTTTAACTTTCAGCGGCCACACTAATGAAAAGAATTTCGTGGGTCTATCAGTTTCCAATGGCTACATAGCTTGTGGTTCAGAAACAAATGAAGTATATGCCTACCATAGATCTCTGCCCATGCCAATGACTTCCTACAAGTTTGGTTCTATCGACCCTATTTCTGGAAAAGAGACTGAGGACGACAATGGACAGTTTGTTTCAAGTGTATGCTGGAGAGGAAAATCCGACATGGTTATTGCAGCCAACTCAAGTGGGTGTATAAAAGTACTACAAATGGTTTGA 3042 41.49 MEEMSEDMTLLEATEDAHVQNKVRQDAPENEYVLKPENTNVVESQEMVTPVDGGYSQYYPHEFTDILEGKNLNRCKSNLKLSDQPECSPHCMDDAGVMVEELTVKNHNGSNLAIIGPSDNRARLLSRHSQWQHLYQLGSGSGSGSSRLDTSYKNHGLAVTPGLENGGYTSFPEAFAGRASRNDCGEELEEMKATDNKGGDTQGSIRTKILSKSGFPEFFVKSTLKGKGIIRRGVQLEGFNVENRNPKNARIGGGISLASDSSLQHDVKPVIPALYRKSEHKHRGSSLDGISLREWLKVPNQKVNKIKCLYIFRHVVELVERSHARGVLLHDLRPSSFRILTTNQVRYVGTFIQSKTPESLMVKDGQCSDSHLTRKRPLEQGNFLSFGGSPKKQKDAQNMSLMARHSYFPFKSGASLETANTRDCNKNASENYNEHFAEQGGWNKPAGLRAYDSAQTSISDLLEETWYVSPEELMTGCCSAKSNIFSLGVLLFELLGKFDSDGALASAMSNLRDRILPPSFLADNLKEVGFCLWLLHPEPASRPTAREILESELINGMPSVPEAEAELSTSIDEEDAESELLLQFLTSLNEQKQKQASKLVEDIRYLESDIEEVNKRHNSAKPVDKSGLSTVDGRDDLILHGGYLNSDPCSQVYRISHTNEERIEKNISQLESAYFSMRSKVDPSENDSAIRTDNDLLRARENCYLPQKDDERSHNDRLGAFFDGFCKYSRYSKFEVRGVLRNGDFNSSSNVICSLSFDRDEDYFAAAGVSKKIRIFEFNSVFNDSVDIHYPAVEMFNRSKLSCICWNGYIKNYLASTDYDGVVKKNCLGTIRNIANVCCVQFSAHSSHLLAFGSADYRTYCFDLRNTKAPWCVLGGHEKAVSYVKFLDSGTLVSASTDNTLKLWDLNKTNPTGLSTKACSLTFSGHTNEKNFVGLSVSNGYIACGSETNEVYAYHRSLPMPMTSYKFGSIDPISGKETEDDNGQFVSSVCWRGKSDMVIAANSSGCIKVLQMV 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22571808 22577761 - MELO3C005738.2.1 Cme09g01828 338688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g01828 1013 PANTHER PROTEIN SPA1-RELATED 2 3 824 IPR044630 GO:0009640
Cme09g01828 1013 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 874 907 - -
Cme09g01828 1013 ProSiteProfiles Trp-Asp (WD) repeats profile. 874 914 IPR001680 GO:0005515
Cme09g01828 1013 Pfam WD domain, G-beta repeat 873 905 IPR001680 GO:0005515
Cme09g01828 1013 SUPERFAMILY WD40 repeat-like 745 1009 IPR036322 GO:0005515
Cme09g01828 1013 SMART serkin_6 182 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01828 1013 ProSitePatterns Trp-Asp (WD) repeats signature. 892 906 IPR019775 -
Cme09g01828 1013 SUPERFAMILY Protein kinase-like (PK-like) 289 559 IPR011009 -
Cme09g01828 1013 PANTHER PROTEIN SPA1-RELATED 2 824 1013 IPR044630 GO:0009640
Cme09g01828 1013 Gene3D Transferase(Phosphotransferase) domain 1 289 561 - -
Cme09g01828 1013 PANTHER PROTEIN SPA1-RELATED 2 3 824 - -
Cme09g01828 1013 Coils Coil 589 616 - -
Cme09g01828 1013 ProSiteProfiles Protein kinase domain profile. 131 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g01828 1013 SMART WD40_4 972 1011 IPR001680 GO:0005515
Cme09g01828 1013 SMART WD40_4 867 905 IPR001680 GO:0005515
Cme09g01828 1013 SMART WD40_4 733 777 IPR001680 GO:0005515
Cme09g01828 1013 SMART WD40_4 916 955 IPR001680 GO:0005515
Cme09g01828 1013 SMART WD40_4 824 863 IPR001680 GO:0005515
Cme09g01828 1013 Gene3D - 825 1013 IPR015943 GO:0005515
Cme09g01828 1013 Gene3D - 721 824 IPR015943 GO:0005515
Cme09g01828 1013 PANTHER PROTEIN SPA1-RELATED 2 824 1013 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g01828 K16240 SPA1; protein suppressor of PHYA-105 1 - csv:101211350 1959.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01828 Cme-Chr9:22571808 Cme12g00894 Cme-Chr12:15759366 1.54E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g105 . . . . . . . Bma14g00626 . . Cma02g01396 Cma15g01269 Car02g01175 Car15g01144 . . Cpe05g00378 . . . . . . . . . . . . . . Cone8ag0255 Cone12ag0261 . . . Csa05g00216 Chy09g01283 . . . Bda07g00466 . . Bpe11g00642 . . . Cmo02g01431 Cmo15g01339 . . . . . Cpe13g00119 Bhi12g00161 . . Lac11g2015 Hepe06g1490 . Lcy12g1581 Cla01g00199 Cam01g0205 Cec01g0199 Cco01g0204 Clacu01g0201 Cmu01g0197 Cre09g2310 Lsi09g00187 . . Cme09g01828
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005844 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 39